miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24337 3' -56.6 NC_005264.1 + 987 0.67 0.856636
Target:  5'- gCAGGuGGGCcuCCcCCUCGCG--GACCGg -3'
miRNA:   3'- -GUCC-CUCGu-GGaGGAGCGUugUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 1090 0.72 0.601832
Target:  5'- gCGGGGAGaACCU-CUCGCAGCucuACCu -3'
miRNA:   3'- -GUCCCUCgUGGAgGAGCGUUGu--UGGc -5'
24337 3' -56.6 NC_005264.1 + 3632 0.66 0.892499
Target:  5'- -cGGGcGCGCUgacauUCgUCGCGAUGGCCGc -3'
miRNA:   3'- guCCCuCGUGG-----AGgAGCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 3723 0.67 0.864232
Target:  5'- gCGGGcGGGCuucuCCgacgUCUCGCGAUcGCCGg -3'
miRNA:   3'- -GUCC-CUCGu---GGa---GGAGCGUUGuUGGC- -5'
24337 3' -56.6 NC_005264.1 + 3993 0.7 0.711965
Target:  5'- gCAGGGcGGCacauGCCUCCUCGCccaccaggggcuuGGCgGGCCGa -3'
miRNA:   3'- -GUCCC-UCG----UGGAGGAGCG-------------UUG-UUGGC- -5'
24337 3' -56.6 NC_005264.1 + 4687 0.66 0.899013
Target:  5'- uCGGGGcgaguGGCGCCgcgUCCaCGaCAGCAGCUGg -3'
miRNA:   3'- -GUCCC-----UCGUGG---AGGaGC-GUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 8307 0.73 0.502662
Target:  5'- -cGGGGGCACCUgCgcCGCGGCGucGCCGu -3'
miRNA:   3'- guCCCUCGUGGAgGa-GCGUUGU--UGGC- -5'
24337 3' -56.6 NC_005264.1 + 10292 0.66 0.899013
Target:  5'- gAGGGAuuaGCucGCCUaCCgggCGCAGCGACgCGc -3'
miRNA:   3'- gUCCCU---CG--UGGA-GGa--GCGUUGUUG-GC- -5'
24337 3' -56.6 NC_005264.1 + 12747 0.68 0.81492
Target:  5'- gAGGGAGgcucgcuCGCCUgCCgucCGCAacGCAGCCGc -3'
miRNA:   3'- gUCCCUC-------GUGGA-GGa--GCGU--UGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 14372 0.66 0.871621
Target:  5'- uCAuGGAGCGCUUcauucCCUCGCGGgcGCCGg -3'
miRNA:   3'- -GUcCCUCGUGGA-----GGAGCGUUguUGGC- -5'
24337 3' -56.6 NC_005264.1 + 14638 0.66 0.88576
Target:  5'- gCAGGcGAGCcucaauUC-CCUCGCGGCAACgGc -3'
miRNA:   3'- -GUCC-CUCGu-----GGaGGAGCGUUGUUGgC- -5'
24337 3' -56.6 NC_005264.1 + 17830 0.68 0.815783
Target:  5'- gAGGGGGCuagauCCUCCaucUCGCGcgcgcuguuCGACCGc -3'
miRNA:   3'- gUCCCUCGu----GGAGG---AGCGUu--------GUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 20253 0.68 0.807088
Target:  5'- gCAGGGguugcGGCGCggCCUCGCGGagggGACCGu -3'
miRNA:   3'- -GUCCC-----UCGUGgaGGAGCGUUg---UUGGC- -5'
24337 3' -56.6 NC_005264.1 + 28031 0.7 0.712956
Target:  5'- -cGGGAGguCUUCCggcgcgCGCGAC-GCCGg -3'
miRNA:   3'- guCCCUCguGGAGGa-----GCGUUGuUGGC- -5'
24337 3' -56.6 NC_005264.1 + 29681 0.69 0.770827
Target:  5'- uCAGGGAGCGuCCagCCUCGU--CAuCCGg -3'
miRNA:   3'- -GUCCCUCGU-GGa-GGAGCGuuGUuGGC- -5'
24337 3' -56.6 NC_005264.1 + 30522 0.67 0.864232
Target:  5'- cCGGGGAGCuccacgACCcgCCUCGCuggcGCgAACCc -3'
miRNA:   3'- -GUCCCUCG------UGGa-GGAGCGu---UG-UUGGc -5'
24337 3' -56.6 NC_005264.1 + 35582 0.69 0.761434
Target:  5'- gGGGGAGCugCUgCg-GCuuCGGCCGa -3'
miRNA:   3'- gUCCCUCGugGAgGagCGuuGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 36379 0.7 0.682981
Target:  5'- gCGGGGAGUAUCUCCgCGCuagGCG-CCa -3'
miRNA:   3'- -GUCCCUCGUGGAGGaGCGu--UGUuGGc -5'
24337 3' -56.6 NC_005264.1 + 37579 0.67 0.832671
Target:  5'- gAGGcGGCAag-UCUCGCGGCGGCCGc -3'
miRNA:   3'- gUCCcUCGUggaGGAGCGUUGUUGGC- -5'
24337 3' -56.6 NC_005264.1 + 38361 0.67 0.848839
Target:  5'- gCGGGGcgguuAGgACCUCCUCcggcgagaGCGGCGacGCCGa -3'
miRNA:   3'- -GUCCC-----UCgUGGAGGAG--------CGUUGU--UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.