miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 3' -57.6 NC_005264.1 + 48390 0.66 0.863148
Target:  5'- -gACUGGGGCGUCggGCGGcGGCCaggagcggguggGGGCa -3'
miRNA:   3'- caUGAUCUUGCGG--UGCU-CCGG------------CCCGa -5'
24338 3' -57.6 NC_005264.1 + 159290 0.69 0.682238
Target:  5'- ----aGGAaagACGCCACGAGGgggCGGGCa -3'
miRNA:   3'- caugaUCU---UGCGGUGCUCCg--GCCCGa -5'
24338 3' -57.6 NC_005264.1 + 5248 0.69 0.682238
Target:  5'- gGUACguuUAGAGCGCCGgGAGGCgaguCGcGGCc -3'
miRNA:   3'- -CAUG---AUCUUGCGGUgCUCCG----GC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 157560 1.07 0.002903
Target:  5'- aGUACUAGAACGCCACGAGGCCGGGCUu -3'
miRNA:   3'- -CAUGAUCUUGCGGUGCUCCGGCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 142963 0.66 0.839766
Target:  5'- -gGCUAGcGCgGCCGCGGcGGUcucuCGGGCa -3'
miRNA:   3'- caUGAUCuUG-CGGUGCU-CCG----GCCCGa -5'
24338 3' -57.6 NC_005264.1 + 129550 0.66 0.839766
Target:  5'- -gGCuUAGGcguCGCCGCGuGGUCGuGGCa -3'
miRNA:   3'- caUG-AUCUu--GCGGUGCuCCGGC-CCGa -5'
24338 3' -57.6 NC_005264.1 + 36223 0.66 0.839766
Target:  5'- -gACcAGAGC-CCGCGAGGUUuagGGGCg -3'
miRNA:   3'- caUGaUCUUGcGGUGCUCCGG---CCCGa -5'
24338 3' -57.6 NC_005264.1 + 31646 0.66 0.831593
Target:  5'- -gGCUAGGaggaauaugugACGCgaacugCGCGAGGCaGGGCUc -3'
miRNA:   3'- caUGAUCU-----------UGCG------GUGCUCCGgCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 156894 0.67 0.788215
Target:  5'- -aACaGGcAACGCCGCGGGuuCGGGCc -3'
miRNA:   3'- caUGaUC-UUGCGGUGCUCcgGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 53913 0.68 0.721959
Target:  5'- gGUGCU-GAAaGCCACGcGGCuCGGGUUc -3'
miRNA:   3'- -CAUGAuCUUgCGGUGCuCCG-GCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 132473 0.68 0.768909
Target:  5'- aGUGC-AGAAUuacggcaGCCACGuGGCCgcaGGGCa -3'
miRNA:   3'- -CAUGaUCUUG-------CGGUGCuCCGG---CCCGa -5'
24338 3' -57.6 NC_005264.1 + 2719 0.67 0.797199
Target:  5'- ---aUAGGcCGCC-CGcGGCCGGGCc -3'
miRNA:   3'- caugAUCUuGCGGuGCuCCGGCCCGa -5'
24338 3' -57.6 NC_005264.1 + 46924 0.66 0.863148
Target:  5'- -gGCUcucaAGGACuGCUACGGGGaCGGGUUc -3'
miRNA:   3'- caUGA----UCUUG-CGGUGCUCCgGCCCGA- -5'
24338 3' -57.6 NC_005264.1 + 95339 0.68 0.76047
Target:  5'- -----cGGGCGCCGCGAaacggacucGGCgGGGCg -3'
miRNA:   3'- caugauCUUGCGGUGCU---------CCGgCCCGa -5'
24338 3' -57.6 NC_005264.1 + 36803 0.66 0.863148
Target:  5'- gGUACUGGAGaggagcCGCCGCGGGccacGCCGaGGa- -3'
miRNA:   3'- -CAUGAUCUU------GCGGUGCUC----CGGC-CCga -5'
24338 3' -57.6 NC_005264.1 + 25203 0.67 0.806037
Target:  5'- cGUACguguuGGCGCaCACGGuGGCCaGGGCa -3'
miRNA:   3'- -CAUGauc--UUGCG-GUGCU-CCGG-CCCGa -5'
24338 3' -57.6 NC_005264.1 + 7917 0.68 0.76047
Target:  5'- aGUACUGGGGggacguaacgcUGCCGCGAGacgaGCCggagGGGCUa -3'
miRNA:   3'- -CAUGAUCUU-----------GCGGUGCUC----CGG----CCCGA- -5'
24338 3' -57.6 NC_005264.1 + 43280 0.69 0.682238
Target:  5'- ----gGGAACGCCGCGGgucugaucggucGGCCuGGGCc -3'
miRNA:   3'- caugaUCUUGCGGUGCU------------CCGG-CCCGa -5'
24338 3' -57.6 NC_005264.1 + 53274 0.66 0.85555
Target:  5'- -cGCUAGAuccugGCCGCGcGGGCUucggGGGCa -3'
miRNA:   3'- caUGAUCUug---CGGUGC-UCCGG----CCCGa -5'
24338 3' -57.6 NC_005264.1 + 110123 0.66 0.839766
Target:  5'- -gGCcgAGAGcCGCCGCGcuuuugGGGgCGGGCg -3'
miRNA:   3'- caUGa-UCUU-GCGGUGC------UCCgGCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.