miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 5' -60.4 NC_005264.1 + 131485 0.67 0.629492
Target:  5'- -aGGCCCGGCA-GGCGUCagcgaguuCUUGCg -3'
miRNA:   3'- caUCGGGUCGUcCCGCAGgac-----GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 11060 0.68 0.589616
Target:  5'- -gGGCCUGGCGGGGCaaGUaCCcGcCUCGUa -3'
miRNA:   3'- caUCGGGUCGUCCCG--CA-GGaC-GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 24940 0.68 0.589616
Target:  5'- --cGCCCGGCu--GCgGUCCUGUUCGUu -3'
miRNA:   3'- cauCGGGUCGuccCG-CAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 18414 0.68 0.609522
Target:  5'- -cGGCCgGcGCAGGcGCGcCCU-CUCGCu -3'
miRNA:   3'- caUCGGgU-CGUCC-CGCaGGAcGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 58002 0.68 0.609522
Target:  5'- cGUGGCUCAGCGGccccggcggacaGGcCGUCgUGCggCGCc -3'
miRNA:   3'- -CAUCGGGUCGUC------------CC-GCAGgACGa-GCG- -5'
24338 5' -60.4 NC_005264.1 + 156625 0.68 0.609522
Target:  5'- -cGGCCgCGGCGGGGgGUCaaaGgaCGCg -3'
miRNA:   3'- caUCGG-GUCGUCCCgCAGga-CgaGCG- -5'
24338 5' -60.4 NC_005264.1 + 142696 0.68 0.619502
Target:  5'- -gGGCgCCGGCGGcGCGccacgCCUGCcCGCa -3'
miRNA:   3'- caUCG-GGUCGUCcCGCa----GGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 124845 0.68 0.619502
Target:  5'- aUAGUCCGGCGGcGGUGgCCgccaCUCGCc -3'
miRNA:   3'- cAUCGGGUCGUC-CCGCaGGac--GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 101229 0.67 0.629492
Target:  5'- aGUAuGCCggCGGCGacGGGCuUCCaGCUCGCg -3'
miRNA:   3'- -CAU-CGG--GUCGU--CCCGcAGGaCGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 48788 0.68 0.579704
Target:  5'- -aAGgCCGGCGGGGCGaaCgacCUCGCg -3'
miRNA:   3'- caUCgGGUCGUCCCGCagGac-GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 392 0.68 0.569828
Target:  5'- -cAGCgCCGGCGcGGucGUGUaCCUGUUCGCg -3'
miRNA:   3'- caUCG-GGUCGU-CC--CGCA-GGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 116415 0.68 0.569828
Target:  5'- -gAGCCCgcGGCaggucgcugGGGGCGUCUgGC-CGCg -3'
miRNA:   3'- caUCGGG--UCG---------UCCCGCAGGaCGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 160684 0.73 0.318691
Target:  5'- --uGCCC-GCAGGG-GUCUaUGCUCGCa -3'
miRNA:   3'- cauCGGGuCGUCCCgCAGG-ACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 124431 0.72 0.387377
Target:  5'- -gGGgCCAGCAGGGCGUacgcggcaUCUGuCUCGg -3'
miRNA:   3'- caUCgGGUCGUCCCGCA--------GGAC-GAGCg -5'
24338 5' -60.4 NC_005264.1 + 34630 0.71 0.44712
Target:  5'- -aGGCCC-GCGGGGUGUUCgcgGCcaccggUCGCg -3'
miRNA:   3'- caUCGGGuCGUCCCGCAGGa--CG------AGCG- -5'
24338 5' -60.4 NC_005264.1 + 123014 0.7 0.465112
Target:  5'- --cGCCaAGCAGGGCGgcacaugCCUcCUCGCc -3'
miRNA:   3'- cauCGGgUCGUCCCGCa------GGAcGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 152887 0.7 0.502176
Target:  5'- -gGGUCCGGCAGucccucgccGGCGUCuCUGCUucgaaccuagCGCg -3'
miRNA:   3'- caUCGGGUCGUC---------CCGCAG-GACGA----------GCG- -5'
24338 5' -60.4 NC_005264.1 + 90583 0.69 0.521187
Target:  5'- aUAGCgCGGCAGGucGCGcCUUGCcCGCg -3'
miRNA:   3'- cAUCGgGUCGUCC--CGCaGGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 11297 0.69 0.530798
Target:  5'- --cGCCagGGUAGGGCGUCCacGC-CGCc -3'
miRNA:   3'- cauCGGg-UCGUCCCGCAGGa-CGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 65591 0.69 0.560975
Target:  5'- -aGGCCCGGCGGccacaucuugcugcuGCGUUCgcgGCUCGUg -3'
miRNA:   3'- caUCGGGUCGUCc--------------CGCAGGa--CGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.