miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24338 5' -60.4 NC_005264.1 + 53252 0.67 0.669394
Target:  5'- --uGCCCcGCGGGcGCGUgUCUgGCUUGCu -3'
miRNA:   3'- cauCGGGuCGUCC-CGCA-GGA-CGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 133513 0.67 0.669394
Target:  5'- cGUAGCCgCAGgAGGcgcuGUGUCCaUGCauggCGCa -3'
miRNA:   3'- -CAUCGG-GUCgUCC----CGCAGG-ACGa---GCG- -5'
24338 5' -60.4 NC_005264.1 + 161278 0.67 0.659442
Target:  5'- cGUAGUCCGGcCGGGGCccgCCUauuGCcggCGCg -3'
miRNA:   3'- -CAUCGGGUC-GUCCCGca-GGA---CGa--GCG- -5'
24338 5' -60.4 NC_005264.1 + 112992 0.67 0.659442
Target:  5'- --cGCCagaaGGCuGcGGCGUaCgUGCUCGCg -3'
miRNA:   3'- cauCGGg---UCGuC-CCGCA-GgACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 42251 0.67 0.659442
Target:  5'- cGUAGUCCGGcCGGGGCccgCCUauuGCcggCGCg -3'
miRNA:   3'- -CAUCGGGUC-GUCCCGca-GGA---CGa--GCG- -5'
24338 5' -60.4 NC_005264.1 + 100215 0.67 0.659442
Target:  5'- -gAGCUCcGCGGGGCGcagUUGCUCGg -3'
miRNA:   3'- caUCGGGuCGUCCCGCag-GACGAGCg -5'
24338 5' -60.4 NC_005264.1 + 91063 0.67 0.649469
Target:  5'- uUGGCCCAcGCucucuaGGCGUCCguucuucaGCUUGCc -3'
miRNA:   3'- cAUCGGGU-CGuc----CCGCAGGa-------CGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 11647 0.67 0.639484
Target:  5'- -cAGCgCGGCAGGGC-UgCUGUcgucgUCGCg -3'
miRNA:   3'- caUCGgGUCGUCCCGcAgGACG-----AGCG- -5'
24338 5' -60.4 NC_005264.1 + 101229 0.67 0.629492
Target:  5'- aGUAuGCCggCGGCGacGGGCuUCCaGCUCGCg -3'
miRNA:   3'- -CAU-CGG--GUCGU--CCCGcAGGaCGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 12458 0.67 0.629492
Target:  5'- -aGGCCCGGCA-GGCGUCagcgaguuCUUGCg -3'
miRNA:   3'- caUCGGGUCGUcCCGCAGgac-----GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 131485 0.67 0.629492
Target:  5'- -aGGCCCGGCA-GGCGUCagcgaguuCUUGCg -3'
miRNA:   3'- caUCGGGUCGUcCCGCAGgac-----GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 142696 0.68 0.619502
Target:  5'- -gGGCgCCGGCGGcGCGccacgCCUGCcCGCa -3'
miRNA:   3'- caUCG-GGUCGUCcCGCa----GGACGaGCG- -5'
24338 5' -60.4 NC_005264.1 + 124845 0.68 0.619502
Target:  5'- aUAGUCCGGCGGcGGUGgCCgccaCUCGCc -3'
miRNA:   3'- cAUCGGGUCGUC-CCGCaGGac--GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 5819 0.68 0.619502
Target:  5'- aUAGUCCGGCGGcGGUGgCCgccaCUCGCc -3'
miRNA:   3'- cAUCGGGUCGUC-CCGCaGGac--GAGCG- -5'
24338 5' -60.4 NC_005264.1 + 58002 0.68 0.609522
Target:  5'- cGUGGCUCAGCGGccccggcggacaGGcCGUCgUGCggCGCc -3'
miRNA:   3'- -CAUCGGGUCGUC------------CC-GCAGgACGa-GCG- -5'
24338 5' -60.4 NC_005264.1 + 37598 0.68 0.609522
Target:  5'- -cGGCCgCGGCGGGGgGUCaaaGgaCGCg -3'
miRNA:   3'- caUCGG-GUCGUCCCgCAGga-CgaGCG- -5'
24338 5' -60.4 NC_005264.1 + 18414 0.68 0.609522
Target:  5'- -cGGCCgGcGCAGGcGCGcCCU-CUCGCu -3'
miRNA:   3'- caUCGGgU-CGUCC-CGCaGGAcGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 156625 0.68 0.609522
Target:  5'- -cGGCCgCGGCGGGGgGUCaaaGgaCGCg -3'
miRNA:   3'- caUCGG-GUCGUCCCgCAGga-CgaGCG- -5'
24338 5' -60.4 NC_005264.1 + 24940 0.68 0.589616
Target:  5'- --cGCCCGGCu--GCgGUCCUGUUCGUu -3'
miRNA:   3'- cauCGGGUCGuccCG-CAGGACGAGCG- -5'
24338 5' -60.4 NC_005264.1 + 11060 0.68 0.589616
Target:  5'- -gGGCCUGGCGGGGCaaGUaCCcGcCUCGUa -3'
miRNA:   3'- caUCGGGUCGUCCCG--CA-GGaC-GAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.