miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24339 3' -56.5 NC_005264.1 + 39632 0.66 0.918065
Target:  5'- aCGGcGCUGUGGUUuugccgcGCGgCCUCGu -3'
miRNA:   3'- aGCC-CGGCACCAAucuau--CGC-GGAGC- -5'
24339 3' -56.5 NC_005264.1 + 34155 0.66 0.918065
Target:  5'- uUCGGGUCGUGGUacc---GCGCCc-- -3'
miRNA:   3'- -AGCCCGGCACCAaucuauCGCGGagc -5'
24339 3' -56.5 NC_005264.1 + 10885 0.66 0.906324
Target:  5'- -gGGGCCGUGG--GGAauucccGGUGCC-CGg -3'
miRNA:   3'- agCCCGGCACCaaUCUa-----UCGCGGaGC- -5'
24339 3' -56.5 NC_005264.1 + 129911 0.66 0.906324
Target:  5'- -gGGGCCGUGG--GGAauucccGGUGCC-CGg -3'
miRNA:   3'- agCCCGGCACCaaUCUa-----UCGCGGaGC- -5'
24339 3' -56.5 NC_005264.1 + 124163 0.66 0.900109
Target:  5'- cUGGGCaaCGUGGUgaug-GGCGCCgccgCGg -3'
miRNA:   3'- aGCCCG--GCACCAaucuaUCGCGGa---GC- -5'
24339 3' -56.5 NC_005264.1 + 97266 0.66 0.899474
Target:  5'- cCGGGCCuUGGcacGGUAGUggccgcuGCCUCGc -3'
miRNA:   3'- aGCCCGGcACCaauCUAUCG-------CGGAGC- -5'
24339 3' -56.5 NC_005264.1 + 33371 0.67 0.880114
Target:  5'- cUCGaGUCG-GGUUuGGUAGCGCUUUGg -3'
miRNA:   3'- -AGCcCGGCaCCAAuCUAUCGCGGAGC- -5'
24339 3' -56.5 NC_005264.1 + 113692 0.67 0.87229
Target:  5'- gUCGGGgUGcaaggcuUGGgcAGA-GGCGCCUCGc -3'
miRNA:   3'- -AGCCCgGC-------ACCaaUCUaUCGCGGAGC- -5'
24339 3' -56.5 NC_005264.1 + 43203 0.67 0.858181
Target:  5'- gCGGGCCGgcggGGggGGggGGgGCUaCGg -3'
miRNA:   3'- aGCCCGGCa---CCaaUCuaUCgCGGaGC- -5'
24339 3' -56.5 NC_005264.1 + 13815 0.67 0.858181
Target:  5'- -gGGGCUGUGGgac-GUGGCGUCUa- -3'
miRNA:   3'- agCCCGGCACCaaucUAUCGCGGAgc -5'
24339 3' -56.5 NC_005264.1 + 162230 0.67 0.858181
Target:  5'- gCGGGCCGgcggGGggGGggGGgGCUaCGg -3'
miRNA:   3'- aGCCCGGCa---CCaaUCuaUCgCGGaGC- -5'
24339 3' -56.5 NC_005264.1 + 35795 0.67 0.850463
Target:  5'- gUGGcGCCGUcg-UGGcgGGCGCCUCu -3'
miRNA:   3'- aGCC-CGGCAccaAUCuaUCGCGGAGc -5'
24339 3' -56.5 NC_005264.1 + 154821 0.67 0.850463
Target:  5'- gUGGcGCCGUcg-UGGcgGGCGCCUCu -3'
miRNA:   3'- aGCC-CGGCAccaAUCuaUCGCGGAGc -5'
24339 3' -56.5 NC_005264.1 + 81861 0.69 0.782354
Target:  5'- gUCGGcGUCGaggaagaaauUGGUc-GAUGGCGCCUUGg -3'
miRNA:   3'- -AGCC-CGGC----------ACCAauCUAUCGCGGAGC- -5'
24339 3' -56.5 NC_005264.1 + 47400 0.69 0.754414
Target:  5'- -aGuGGCgCGUGGUUGGGU-GCGCCg-- -3'
miRNA:   3'- agC-CCG-GCACCAAUCUAuCGCGGagc -5'
24339 3' -56.5 NC_005264.1 + 40071 0.69 0.744878
Target:  5'- gCGGGCC-UGGUacccgAGCGCUUCGu -3'
miRNA:   3'- aGCCCGGcACCAaucuaUCGCGGAGC- -5'
24339 3' -56.5 NC_005264.1 + 1216 0.71 0.665863
Target:  5'- aUGGGCCGUGGggc----GUGCCUCa -3'
miRNA:   3'- aGCCCGGCACCaaucuauCGCGGAGc -5'
24339 3' -56.5 NC_005264.1 + 52203 0.71 0.665863
Target:  5'- -aGGGCCGUGGggcgcGGUGGCgcgagcugguacGCCUUGa -3'
miRNA:   3'- agCCCGGCACCaau--CUAUCG------------CGGAGC- -5'
24339 3' -56.5 NC_005264.1 + 80229 0.72 0.585086
Target:  5'- cUUGGGCCGUGGacggAGAUAaugggcaagucuGUGCUUCGu -3'
miRNA:   3'- -AGCCCGGCACCaa--UCUAU------------CGCGGAGC- -5'
24339 3' -56.5 NC_005264.1 + 156912 1.08 0.003212
Target:  5'- uUCGGGCCGUGGUUAGAUAGCGCCUCGc -3'
miRNA:   3'- -AGCCCGGCACCAAUCUAUCGCGGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.