miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24339 5' -51.8 NC_005264.1 + 150741 0.66 0.991969
Target:  5'- cGCgCGGGGCGUACUuguucGCgUCGugUAa-- -3'
miRNA:   3'- -CG-GCUCCGCAUGA-----UGgAGUugAUgac -5'
24339 5' -51.8 NC_005264.1 + 31715 0.66 0.991969
Target:  5'- cGCgCGGGGCGUACUuguucGCgUCGugUAa-- -3'
miRNA:   3'- -CG-GCUCCGCAUGA-----UGgAGUugAUgac -5'
24339 5' -51.8 NC_005264.1 + 122789 0.66 0.990804
Target:  5'- cGCCGGGGCGcUGCggGCCcuuggUCGACcGCc- -3'
miRNA:   3'- -CGGCUCCGC-AUGa-UGG-----AGUUGaUGac -5'
24339 5' -51.8 NC_005264.1 + 3763 0.66 0.990804
Target:  5'- cGCCGGGGCGcUGCggGCCcuuggUCGACcGCc- -3'
miRNA:   3'- -CGGCUCCGC-AUGa-UGG-----AGUUGaUGac -5'
24339 5' -51.8 NC_005264.1 + 29792 0.66 0.990804
Target:  5'- cGCCacguAGGCGUugauauGCUuccGCCUCGGC-GCUGg -3'
miRNA:   3'- -CGGc---UCCGCA------UGA---UGGAGUUGaUGAC- -5'
24339 5' -51.8 NC_005264.1 + 93042 0.66 0.989511
Target:  5'- cGCCGAauGCGUGCUGCUgc-GCUGCc- -3'
miRNA:   3'- -CGGCUc-CGCAUGAUGGaguUGAUGac -5'
24339 5' -51.8 NC_005264.1 + 109624 0.66 0.988079
Target:  5'- cGCgGAGauacGCGUccACUACCUCGGCcACg- -3'
miRNA:   3'- -CGgCUC----CGCA--UGAUGGAGUUGaUGac -5'
24339 5' -51.8 NC_005264.1 + 52430 0.66 0.988079
Target:  5'- gGCCGAGaaGUACUGgCUCGAgcCUGCc- -3'
miRNA:   3'- -CGGCUCcgCAUGAUgGAGUU--GAUGac -5'
24339 5' -51.8 NC_005264.1 + 93197 0.66 0.988079
Target:  5'- aGCUGAGGUacgGUGCUGCC-CAGCc---- -3'
miRNA:   3'- -CGGCUCCG---CAUGAUGGaGUUGaugac -5'
24339 5' -51.8 NC_005264.1 + 69643 0.66 0.986502
Target:  5'- gGCUG-GGCaGcACcgUACCUCAGCUGCUc -3'
miRNA:   3'- -CGGCuCCG-CaUG--AUGGAGUUGAUGAc -5'
24339 5' -51.8 NC_005264.1 + 17286 0.66 0.984768
Target:  5'- -aCGGGGCGgaggGCUGCC-CAuCUaACUGa -3'
miRNA:   3'- cgGCUCCGCa---UGAUGGaGUuGA-UGAC- -5'
24339 5' -51.8 NC_005264.1 + 120235 0.67 0.98287
Target:  5'- cGCCGGGGCcgguGUACcgaCUCAGCgaauugcgaUACUGg -3'
miRNA:   3'- -CGGCUCCG----CAUGaugGAGUUG---------AUGAC- -5'
24339 5' -51.8 NC_005264.1 + 138167 0.67 0.980798
Target:  5'- uCCGAGGUGgcgGCUuccggccuGCCUC-GCUGCa- -3'
miRNA:   3'- cGGCUCCGCa--UGA--------UGGAGuUGAUGac -5'
24339 5' -51.8 NC_005264.1 + 69816 0.67 0.973462
Target:  5'- aGuuGAGGCcacuagccACUGCCUUGACUGCc- -3'
miRNA:   3'- -CggCUCCGca------UGAUGGAGUUGAUGac -5'
24339 5' -51.8 NC_005264.1 + 116410 0.68 0.97178
Target:  5'- gGCCGAcgucgagcgcagggcGGCGUGCaGCCUCGcgGCggacCUGg -3'
miRNA:   3'- -CGGCU---------------CCGCAUGaUGGAGU--UGau--GAC- -5'
24339 5' -51.8 NC_005264.1 + 55828 0.68 0.970617
Target:  5'- aGCCGGuGGCGgcgcgGCUgacuggGCCUCAggGCUuCUGg -3'
miRNA:   3'- -CGGCU-CCGCa----UGA------UGGAGU--UGAuGAC- -5'
24339 5' -51.8 NC_005264.1 + 100754 0.68 0.957049
Target:  5'- cGCCGAGGCGUcACgACagaaaUCGAUcggACUGa -3'
miRNA:   3'- -CGGCUCCGCA-UGaUGg----AGUUGa--UGAC- -5'
24339 5' -51.8 NC_005264.1 + 9676 0.7 0.929593
Target:  5'- gGCCuuggggGAGGCGgGCUcgcGCCUCGAC-GCUGu -3'
miRNA:   3'- -CGG------CUCCGCaUGA---UGGAGUUGaUGAC- -5'
24339 5' -51.8 NC_005264.1 + 128703 0.7 0.929593
Target:  5'- gGCCuuggggGAGGCGgGCUcgcGCCUCGAC-GCUGu -3'
miRNA:   3'- -CGG------CUCCGCaUGA---UGGAGUUGaUGAC- -5'
24339 5' -51.8 NC_005264.1 + 156151 0.72 0.840016
Target:  5'- gGgCGAGGCGgcCgucucgGCCUCG-CUGCUGg -3'
miRNA:   3'- -CgGCUCCGCauGa-----UGGAGUuGAUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.