Results 81 - 100 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 65061 | 0.69 | 0.671699 |
Target: 5'- aCGCCGCGccGCCCaUCcaUCCGUgaGGGUCa -3' miRNA: 3'- -GCGGCGUcuUGGGcAG--AGGCA--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 87532 | 0.69 | 0.681532 |
Target: 5'- gCGCgGCAGAugCUG-CagCGUGGGCg -3' miRNA: 3'- -GCGgCGUCUugGGCaGagGCAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 153162 | 0.69 | 0.681532 |
Target: 5'- aGgCGC-GAGCCCGcCUCCcccaAGGCCu -3' miRNA: 3'- gCgGCGuCUUGGGCaGAGGca--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 59121 | 0.69 | 0.691327 |
Target: 5'- cCGCCGCuGAugCCGcgccgccgCUCCacuGGCCc -3' miRNA: 3'- -GCGGCGuCUugGGCa-------GAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 124047 | 0.7 | 0.602443 |
Target: 5'- uCGCCGCGGAGuaCGUCaCCGggacgAGGCa -3' miRNA: 3'- -GCGGCGUCUUggGCAGaGGCa----UCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 123791 | 0.7 | 0.642048 |
Target: 5'- cCGCCGCGcGAACUCGgccagUCCGacUGGGUCg -3' miRNA: 3'- -GCGGCGU-CUUGGGCag---AGGC--AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 132217 | 0.7 | 0.642048 |
Target: 5'- gCGCUGCGcgcGGAUCCGUCgccgccgCCGUcgccGGGCUg -3' miRNA: 3'- -GCGGCGU---CUUGGGCAGa------GGCA----UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 121749 | 0.7 | 0.63214 |
Target: 5'- gGCCGCcccggccGGGCCCGUCUUC-UAGGUUu -3' miRNA: 3'- gCGGCGu------CUUGGGCAGAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 59802 | 0.7 | 0.622232 |
Target: 5'- cCGCCGCGGAGCCguaCGUagaCGUgaGGGUCg -3' miRNA: 3'- -GCGGCGUCUUGG---GCAgagGCA--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 4765 | 0.7 | 0.642048 |
Target: 5'- cCGCCGCGcGAACUCGgccagUCCGacUGGGUCg -3' miRNA: 3'- -GCGGCGU-CUUGGGCag---AGGC--AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 85057 | 0.7 | 0.622232 |
Target: 5'- gCGCCGCGG--UgCGUCUCUGc-GGCCg -3' miRNA: 3'- -GCGGCGUCuuGgGCAGAGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 109708 | 0.7 | 0.612331 |
Target: 5'- cCGCgGCAGAuuGCCCGgcCUCCuc-GGCCc -3' miRNA: 3'- -GCGgCGUCU--UGGGCa-GAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 50276 | 0.7 | 0.612331 |
Target: 5'- gGCCGCGGAgaucaccaacGCCCuaUUUCGgcGGCCg -3' miRNA: 3'- gCGGCGUCU----------UGGGcaGAGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 21087 | 0.7 | 0.612331 |
Target: 5'- uGCCGU---GCUCGcCUCCGaGGGCCu -3' miRNA: 3'- gCGGCGucuUGGGCaGAGGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 124427 | 0.7 | 0.612331 |
Target: 5'- -cUCGCAGAGCgCGUgCUCCGc-GGCCu -3' miRNA: 3'- gcGGCGUCUUGgGCA-GAGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 58246 | 0.7 | 0.63214 |
Target: 5'- cCGCUGCucacucGGCCCGaUC-CCGUGGGCg -3' miRNA: 3'- -GCGGCGuc----UUGGGC-AGaGGCAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 13190 | 0.7 | 0.642048 |
Target: 5'- gCGCUGCGcgcGGAUCCGUCgccgccgCCGUcgccGGGCUg -3' miRNA: 3'- -GCGGCGU---CUUGGGCAGa------GGCA----UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 97639 | 0.7 | 0.622232 |
Target: 5'- aGCCGCAGAGCaaaCGUUgCCGUgaaAGcGCUg -3' miRNA: 3'- gCGGCGUCUUGg--GCAGaGGCA---UC-CGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 102681 | 0.7 | 0.622232 |
Target: 5'- uGCUGaCAGAGgCCG-CgcaCCGUAGGCUg -3' miRNA: 3'- gCGGC-GUCUUgGGCaGa--GGCAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 94 | 0.7 | 0.622232 |
Target: 5'- uCGCCcuGCAGAgauagcuaGCCCauggagCUCCGcGGGCCa -3' miRNA: 3'- -GCGG--CGUCU--------UGGGca----GAGGCaUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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