Results 61 - 80 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 105951 | 0.68 | 0.710771 |
Target: 5'- uCGCC-CAGuuCCCgGUCUUCGacagUAGGCCu -3' miRNA: 3'- -GCGGcGUCuuGGG-CAGAGGC----AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 33803 | 0.68 | 0.720403 |
Target: 5'- aCGCCGCuuuGGACCgGcUCgCCGgcaAGGCUg -3' miRNA: 3'- -GCGGCGu--CUUGGgC-AGaGGCa--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 3201 | 0.68 | 0.729964 |
Target: 5'- gGCCGCGuu-CCUGUCUUCGcguagccaccUAGGCUg -3' miRNA: 3'- gCGGCGUcuuGGGCAGAGGC----------AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 58902 | 0.68 | 0.739446 |
Target: 5'- gCGCauaGCGGAugCCGcCUCCucgauggcGUAGGUUa -3' miRNA: 3'- -GCGg--CGUCUugGGCaGAGG--------CAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 110533 | 0.68 | 0.739446 |
Target: 5'- aGCUGCAGAACUuuauaaggCGgagCUagCCGcUAGGCCg -3' miRNA: 3'- gCGGCGUCUUGG--------GCa--GA--GGC-AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 107124 | 0.68 | 0.739446 |
Target: 5'- aGCCGCGGAcuCCUGUCUa-GgcGGCg -3' miRNA: 3'- gCGGCGUCUu-GGGCAGAggCauCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 126679 | 0.68 | 0.74884 |
Target: 5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3' miRNA: 3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 144278 | 0.68 | 0.74884 |
Target: 5'- gGCCgGCGGAugCCG-CUCCGacugacGCCg -3' miRNA: 3'- gCGG-CGUCUugGGCaGAGGCauc---CGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 7652 | 0.68 | 0.74884 |
Target: 5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3' miRNA: 3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 64077 | 0.68 | 0.758138 |
Target: 5'- aGCCGCAGcaGAgCCGcCUUCc-GGGCCa -3' miRNA: 3'- gCGGCGUC--UUgGGCaGAGGcaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 58679 | 0.67 | 0.767332 |
Target: 5'- gCGCUGCAGGcgcACCCGgcCUCUaUGacGGCCg -3' miRNA: 3'- -GCGGCGUCU---UGGGCa-GAGGcAU--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 105244 | 0.67 | 0.767332 |
Target: 5'- gGCCGCGGAGCaaaCGUUuagagCCau-GGCCa -3' miRNA: 3'- gCGGCGUCUUGg--GCAGa----GGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 102132 | 0.67 | 0.767332 |
Target: 5'- gGCCGCGGccaacAACCUGcugacCUCUGcggAGGCCu -3' miRNA: 3'- gCGGCGUC-----UUGGGCa----GAGGCa--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 104209 | 0.67 | 0.776413 |
Target: 5'- uCGCCGCAGAGCaCgCGUCgCac-GGGUCa -3' miRNA: 3'- -GCGGCGUCUUG-G-GCAGaGgcaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 6237 | 0.67 | 0.776413 |
Target: 5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3' miRNA: 3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 142596 | 0.67 | 0.776413 |
Target: 5'- gCGCCGCAaccccugcccACCCGUCaCgCGcgGGGCCa -3' miRNA: 3'- -GCGGCGUcu--------UGGGCAGaG-GCa-UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 125264 | 0.67 | 0.776413 |
Target: 5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3' miRNA: 3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 35590 | 0.67 | 0.784482 |
Target: 5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3' miRNA: 3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 154617 | 0.67 | 0.784482 |
Target: 5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3' miRNA: 3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 146487 | 0.67 | 0.785373 |
Target: 5'- ---aGCAGAAgCCuaugGUCUCCcUGGGCCg -3' miRNA: 3'- gcggCGUCUUgGG----CAGAGGcAUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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