Results 101 - 120 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 133372 | 0.66 | 0.836147 |
Target: 5'- gCGCUGCAccGCCCcccaaUCCGcgugGGGCCg -3' miRNA: 3'- -GCGGCGUcuUGGGcag--AGGCa---UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 136359 | 0.69 | 0.661835 |
Target: 5'- gCGCCGCAcGGGCCCucuGUCUacuaugaCGUagcauggcccaGGGCCa -3' miRNA: 3'- -GCGGCGU-CUUGGG---CAGAg------GCA-----------UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 136845 | 0.67 | 0.811445 |
Target: 5'- gCGCCGauacuGuACCCGUCUgCCG-AGGUUa -3' miRNA: 3'- -GCGGCgu---CuUGGGCAGA-GGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 138384 | 0.72 | 0.524602 |
Target: 5'- cCGCCGCGGAacaaGCCaGUCgCUaUGGGCCa -3' miRNA: 3'- -GCGGCGUCU----UGGgCAGaGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 139719 | 0.67 | 0.811445 |
Target: 5'- gGCCGagcauuaGGGACCgGggcCUCCGgcGGCa -3' miRNA: 3'- gCGGCg------UCUUGGgCa--GAGGCauCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 140175 | 0.73 | 0.450887 |
Target: 5'- aGCgGCgAGAcGCUCGUcCUUCGUGGGCCu -3' miRNA: 3'- gCGgCG-UCU-UGGGCA-GAGGCAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 141466 | 0.67 | 0.802897 |
Target: 5'- aGCgGCGGGGCCUcUUUCCaccGGCCg -3' miRNA: 3'- gCGgCGUCUUGGGcAGAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 142567 | 0.69 | 0.661835 |
Target: 5'- aGCgCGCAGAcgguCCC--CUCCGcgAGGCCg -3' miRNA: 3'- gCG-GCGUCUu---GGGcaGAGGCa-UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 142596 | 0.67 | 0.776413 |
Target: 5'- gCGCCGCAaccccugcccACCCGUCaCgCGcgGGGCCa -3' miRNA: 3'- -GCGGCGUcu--------UGGGCAGaG-GCa-UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 144278 | 0.68 | 0.74884 |
Target: 5'- gGCCgGCGGAugCCG-CUCCGacugacGCCg -3' miRNA: 3'- gCGG-CGUCUugGGCaGAGGCauc---CGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 144827 | 0.66 | 0.836147 |
Target: 5'- uGaCCGCGGccGACCCGcCgCCGUcAGaGCCg -3' miRNA: 3'- gC-GGCGUC--UUGGGCaGaGGCA-UC-CGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 146487 | 0.67 | 0.785373 |
Target: 5'- ---aGCAGAAgCCuaugGUCUCCcUGGGCCg -3' miRNA: 3'- gcggCGUCUUgGG----CAGAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 146977 | 0.66 | 0.857047 |
Target: 5'- gGCUGCGGAGCCUc-CUCgagaaucuuuagcaCGUGGGCg -3' miRNA: 3'- gCGGCGUCUUGGGcaGAG--------------GCAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 147698 | 0.66 | 0.859285 |
Target: 5'- uCGCCGCAcgcGAuuGCCCGUgUCgGUAGa-- -3' miRNA: 3'- -GCGGCGU---CU--UGGGCAgAGgCAUCcgg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 149136 | 0.72 | 0.515113 |
Target: 5'- aGCCGCAcGAGCUgccaGuUCUCCcUGGGCCa -3' miRNA: 3'- gCGGCGU-CUUGGg---C-AGAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 152125 | 0.66 | 0.836147 |
Target: 5'- gCGCCGgGGGACaaGUagagGUAGGCCa -3' miRNA: 3'- -GCGGCgUCUUGggCAgaggCAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 152919 | 0.72 | 0.534156 |
Target: 5'- gCGCCGCAaAGCCCGcagucgcgagUCcCCGaAGGCCc -3' miRNA: 3'- -GCGGCGUcUUGGGC----------AGaGGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 153162 | 0.69 | 0.681532 |
Target: 5'- aGgCGC-GAGCCCGcCUCCcccaAGGCCu -3' miRNA: 3'- gCgGCGuCUUGGGCaGAGGca--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 154617 | 0.67 | 0.784482 |
Target: 5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3' miRNA: 3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 155074 | 0.66 | 0.828078 |
Target: 5'- --aCGCuGAAgCCGUcCUCUGUggggAGGCCa -3' miRNA: 3'- gcgGCGuCUUgGGCA-GAGGCA----UCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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