miRNA display CGI


Results 61 - 80 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 104209 0.67 0.776413
Target:  5'- uCGCCGCAGAGCaCgCGUCgCac-GGGUCa -3'
miRNA:   3'- -GCGGCGUCUUG-G-GCAGaGgcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 102681 0.7 0.622232
Target:  5'- uGCUGaCAGAGgCCG-CgcaCCGUAGGCUg -3'
miRNA:   3'- gCGGC-GUCUUgGGCaGa--GGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 102132 0.67 0.767332
Target:  5'- gGCCGCGGccaacAACCUGcugacCUCUGcggAGGCCu -3'
miRNA:   3'- gCGGCGUC-----UUGGGCa----GAGGCa--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 100383 0.66 0.828078
Target:  5'- uGCUGCGGAugCCG-CUgcugcgccCCGUAuuGGUCg -3'
miRNA:   3'- gCGGCGUCUugGGCaGA--------GGCAU--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 98306 0.66 0.859285
Target:  5'- -aUCGCGGAACCCccCUCCGc-GGCg -3'
miRNA:   3'- gcGGCGUCUUGGGcaGAGGCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 97639 0.7 0.622232
Target:  5'- aGCCGCAGAGCaaaCGUUgCCGUgaaAGcGCUg -3'
miRNA:   3'- gCGGCGUCUUGg--GCAGaGGCA---UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 95802 0.66 0.816502
Target:  5'- cCGCCGCuuacgucgGGGGCCUGcgcaaggccgccgCUCCGUccAGGCa -3'
miRNA:   3'- -GCGGCG--------UCUUGGGCa------------GAGGCA--UCCGg -5'
24340 5' -58.6 NC_005264.1 + 92566 0.67 0.785373
Target:  5'- aGuuGCGGGACUCGa--CCG-AGGCCu -3'
miRNA:   3'- gCggCGUCUUGGGCagaGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 90438 0.67 0.802897
Target:  5'- uCGCCGUAGAGaUCG-CUCagGUGGGCg -3'
miRNA:   3'- -GCGGCGUCUUgGGCaGAGg-CAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 87532 0.69 0.681532
Target:  5'- gCGCgGCAGAugCUG-CagCGUGGGCg -3'
miRNA:   3'- -GCGgCGUCUugGGCaGagGCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 85057 0.7 0.622232
Target:  5'- gCGCCGCGG--UgCGUCUCUGc-GGCCg -3'
miRNA:   3'- -GCGGCGUCuuGgGCAGAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 82175 0.67 0.785373
Target:  5'- uGCCGUgcGGCCgGUCggCGgcGGCCa -3'
miRNA:   3'- gCGGCGucUUGGgCAGagGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 82012 0.71 0.582738
Target:  5'- gGCCGCAGAGaugUCGUCUuuGUcccaaGGGUCu -3'
miRNA:   3'- gCGGCGUCUUg--GGCAGAggCA-----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 79418 0.69 0.685455
Target:  5'- cCGCgGCGGAACCCagcgugggcggugcgGggUCUCCGgGGGCa -3'
miRNA:   3'- -GCGgCGUCUUGGG---------------C--AGAGGCaUCCGg -5'
24340 5' -58.6 NC_005264.1 + 75000 0.66 0.836147
Target:  5'- cCGuuGUAGAGCacuCCGUCgguaaaggCCGUguugGGGCUa -3'
miRNA:   3'- -GCggCGUCUUG---GGCAGa-------GGCA----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 72778 0.67 0.811445
Target:  5'- uGgCGCAGAACUCGUaggucaUCCc--GGCCa -3'
miRNA:   3'- gCgGCGUCUUGGGCAg-----AGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 67634 0.71 0.542808
Target:  5'- gGgCGCAGGgguguccugcgcgGCCCGUCUUCGUuauGGCa -3'
miRNA:   3'- gCgGCGUCU-------------UGGGCAGAGGCAu--CCGg -5'
24340 5' -58.6 NC_005264.1 + 65684 0.69 0.671699
Target:  5'- aCGUgGCu---CUCGcgucUCUCCGUAGGCCg -3'
miRNA:   3'- -GCGgCGucuuGGGC----AGAGGCAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 65163 0.71 0.572931
Target:  5'- cCGCgGCGGcGCCC-UCUCUGgccauGGCCg -3'
miRNA:   3'- -GCGgCGUCuUGGGcAGAGGCau---CCGG- -5'
24340 5' -58.6 NC_005264.1 + 65061 0.69 0.671699
Target:  5'- aCGCCGCGccGCCCaUCcaUCCGUgaGGGUCa -3'
miRNA:   3'- -GCGGCGUcuUGGGcAG--AGGCA--UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.