Results 81 - 100 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 64077 | 0.68 | 0.758138 |
Target: 5'- aGCCGCAGcaGAgCCGcCUUCc-GGGCCa -3' miRNA: 3'- gCGGCGUC--UUgGGCaGAGGcaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 63265 | 0.69 | 0.661835 |
Target: 5'- uGCCGCuGcGCuuGUC-CaagaGUAGGCCg -3' miRNA: 3'- gCGGCGuCuUGggCAGaGg---CAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 59802 | 0.7 | 0.622232 |
Target: 5'- cCGCCGCGGAGCCguaCGUagaCGUgaGGGUCg -3' miRNA: 3'- -GCGGCGUCUUGG---GCAgagGCA--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 59774 | 0.69 | 0.681532 |
Target: 5'- aCGCuuCGCGGGACUCGUCgcCCGcaggGGGCg -3' miRNA: 3'- -GCG--GCGUCUUGGGCAGa-GGCa---UCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 59121 | 0.69 | 0.691327 |
Target: 5'- cCGCCGCuGAugCCGcgccgccgCUCCacuGGCCc -3' miRNA: 3'- -GCGGCGuCUugGGCa-------GAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 58902 | 0.68 | 0.739446 |
Target: 5'- gCGCauaGCGGAugCCGcCUCCucgauggcGUAGGUUa -3' miRNA: 3'- -GCGg--CGUCUugGGCaGAGG--------CAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 58679 | 0.67 | 0.767332 |
Target: 5'- gCGCUGCAGGcgcACCCGgcCUCUaUGacGGCCg -3' miRNA: 3'- -GCGGCGUCU---UGGGCa-GAGGcAU--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 58246 | 0.7 | 0.63214 |
Target: 5'- cCGCUGCucacucGGCCCGaUC-CCGUGGGCg -3' miRNA: 3'- -GCGGCGuc----UUGGGC-AGaGGCAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 53738 | 0.71 | 0.563164 |
Target: 5'- uCGUCGU---GCCCGUCUCCGgc-GCCg -3' miRNA: 3'- -GCGGCGucuUGGGCAGAGGCaucCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 50276 | 0.7 | 0.612331 |
Target: 5'- gGCCGCGGAgaucaccaacGCCCuaUUUCGgcGGCCg -3' miRNA: 3'- gCGGCGUCU----------UGGGcaGAGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 46758 | 0.71 | 0.582738 |
Target: 5'- cCGUCGCAGGACCagaUCUUCGcuUGGGCg -3' miRNA: 3'- -GCGGCGUCUUGGgc-AGAGGC--AUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 46374 | 0.66 | 0.836147 |
Target: 5'- gGCgCGCAGGACaCCGauacgCgggUCGUcaGGGCCa -3' miRNA: 3'- gCG-GCGUCUUG-GGCa----Ga--GGCA--UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 43814 | 0.66 | 0.836147 |
Target: 5'- gCGUCaGCAGAACagaaUCUCCGUAG-CCa -3' miRNA: 3'- -GCGG-CGUCUUGggc-AGAGGCAUCcGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 43284 | 0.71 | 0.553443 |
Target: 5'- aCGCCGCGGGucugAUCgGUCggCC-UGGGCCa -3' miRNA: 3'- -GCGGCGUCU----UGGgCAGa-GGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 42620 | 0.67 | 0.797698 |
Target: 5'- gGCCGCGGAcGCCCGguccgCUgCGUAcccccaucgcgcgccGGCa -3' miRNA: 3'- gCGGCGUCU-UGGGCa----GAgGCAU---------------CCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 41365 | 0.66 | 0.851757 |
Target: 5'- cCGCCGCGaaaacGGCCUcUCUaauguacgCGUAGGCCg -3' miRNA: 3'- -GCGGCGUc----UUGGGcAGAg-------GCAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 39917 | 0.69 | 0.701077 |
Target: 5'- uCGCCGUguagccagAGAACUCGaCcCCGggugGGGCCa -3' miRNA: 3'- -GCGGCG--------UCUUGGGCaGaGGCa---UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 38198 | 0.66 | 0.851757 |
Target: 5'- gCGUCGCGcGGCCCGauagcggCUCCGgucGCCg -3' miRNA: 3'- -GCGGCGUcUUGGGCa------GAGGCaucCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 38004 | 0.66 | 0.834547 |
Target: 5'- cCGCCGCcGGACUauugaacgCCGUGGGCg -3' miRNA: 3'- -GCGGCGuCUUGGgcaga---GGCAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 36067 | 0.71 | 0.543771 |
Target: 5'- uGCCGacgcggAGAGCCCGUUUCCG-AGGaCg -3' miRNA: 3'- gCGGCg-----UCUUGGGCAGAGGCaUCCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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