miRNA display CGI


Results 101 - 120 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 35590 0.67 0.784482
Target:  5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3'
miRNA:   3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 34135 0.69 0.681532
Target:  5'- aGgCGC-GAGCCCGcCUCCcccaAGGCCu -3'
miRNA:   3'- gCgGCGuCUUGGGCaGAGGca--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 33803 0.68 0.720403
Target:  5'- aCGCCGCuuuGGACCgGcUCgCCGgcaAGGCUg -3'
miRNA:   3'- -GCGGCGu--CUUGGgC-AGaGGCa--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 29812 0.68 0.709804
Target:  5'- cCGCCGCGGAAagggucuuCCUGUCuaucuugUCUGUGGcGCUc -3'
miRNA:   3'- -GCGGCGUCUU--------GGGCAG-------AGGCAUC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 26363 0.72 0.496351
Target:  5'- gCGCCGCGGcaggcugcgcGGCgCCGUCUCUGagcgcGGCCu -3'
miRNA:   3'- -GCGGCGUC----------UUG-GGCAGAGGCau---CCGG- -5'
24340 5' -58.6 NC_005264.1 + 23427 0.71 0.572931
Target:  5'- aCGCCaGCGGuGCCCGUCUCg--AGuGCCc -3'
miRNA:   3'- -GCGG-CGUCuUGGGCAGAGgcaUC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 21162 0.67 0.802034
Target:  5'- uCGCCGUAGucACCCGaucccagCUCCGaUGuagcgacaucgucGGCCg -3'
miRNA:   3'- -GCGGCGUCu-UGGGCa------GAGGC-AU-------------CCGG- -5'
24340 5' -58.6 NC_005264.1 + 21087 0.7 0.612331
Target:  5'- uGCCGU---GCUCGcCUCCGaGGGCCu -3'
miRNA:   3'- gCGGCGucuUGGGCaGAGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 20846 0.66 0.84715
Target:  5'- uGCCGUauuccacagucuGGAGCCUgcuacuccaugcccuGUUUCCGUuaaacaugAGGCCu -3'
miRNA:   3'- gCGGCG------------UCUUGGG---------------CAGAGGCA--------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 18520 0.66 0.836147
Target:  5'- uGCCGaucgGGGGCgCCGUCUCCcccugaGGGCg -3'
miRNA:   3'- gCGGCg---UCUUG-GGCAGAGGca----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 16437 0.71 0.582738
Target:  5'- uGCCGCGGGGCCUG-C-CCGcGGGUg -3'
miRNA:   3'- gCGGCGUCUUGGGCaGaGGCaUCCGg -5'
24340 5' -58.6 NC_005264.1 + 13190 0.7 0.642048
Target:  5'- gCGCUGCGcgcGGAUCCGUCgccgccgCCGUcgccGGGCUg -3'
miRNA:   3'- -GCGGCGU---CUUGGGCAGa------GGCA----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 12690 0.66 0.851757
Target:  5'- cCGUCGCGGAccacGCCCGggaccggaUCC-UAGGaCCg -3'
miRNA:   3'- -GCGGCGUCU----UGGGCag------AGGcAUCC-GG- -5'
24340 5' -58.6 NC_005264.1 + 7652 0.68 0.74884
Target:  5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3'
miRNA:   3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 7324 0.69 0.701077
Target:  5'- aGCCGCGGGAgaucCCgCGUCUUCGUccuccGCCu -3'
miRNA:   3'- gCGGCGUCUU----GG-GCAGAGGCAuc---CGG- -5'
24340 5' -58.6 NC_005264.1 + 6237 0.67 0.776413
Target:  5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3'
miRNA:   3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 5020 0.7 0.602443
Target:  5'- uCGCCGCGGAGuaCGUCaCCGggacgAGGCa -3'
miRNA:   3'- -GCGGCGUCUUggGCAGaGGCa----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 4765 0.7 0.642048
Target:  5'- cCGCCGCGcGAACUCGgccagUCCGacUGGGUCg -3'
miRNA:   3'- -GCGGCGU-CUUGGGCag---AGGC--AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 3273 0.72 0.515113
Target:  5'- aGCCGCAGcGCCaCGUC-CC-UGGGCg -3'
miRNA:   3'- gCGGCGUCuUGG-GCAGaGGcAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 3201 0.68 0.729964
Target:  5'- gGCCGCGuu-CCUGUCUUCGcguagccaccUAGGCUg -3'
miRNA:   3'- gCGGCGUcuuGGGCAGAGGC----------AUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.