Results 121 - 127 of 127 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24340 | 5' | -58.6 | NC_005264.1 | + | 3074 | 0.66 | 0.854791 |
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Target: 5'- uCGCCGCgacuggcggcggccgAGGACCCGUUcgggcgauUCCc--GGCCc -3' miRNA: 3'- -GCGGCG---------------UCUUGGGCAG--------AGGcauCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 2728 | 0.71 | 0.572931 |
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Target: 5'- cCGCgGCcGGGCCCGUCUUC-UAGGUUu -3' miRNA: 3'- -GCGgCGuCUUGGGCAGAGGcAUCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 2433 | 0.73 | 0.450887 |
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Target: 5'- gGCCGCGGAcacguccguguGCCCGUUcuucCCGgagcUGGGCCu -3' miRNA: 3'- gCGGCGUCU-----------UGGGCAGa---GGC----AUCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 1577 | 0.67 | 0.811445 |
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Target: 5'- gGCUGCAGGGaCC-UCUCgGUGGGgCa -3' miRNA: 3'- gCGGCGUCUUgGGcAGAGgCAUCCgG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 1509 | 0.66 | 0.844042 |
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Target: 5'- aCGCCGCuGGcuGCgCCGUUUUUugGGGCCc -3' miRNA: 3'- -GCGGCGuCU--UG-GGCAGAGGcaUCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 108 | 0.67 | 0.811445 |
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Target: 5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3' miRNA: 3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 94 | 0.7 | 0.622232 |
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Target: 5'- uCGCCcuGCAGAgauagcuaGCCCauggagCUCCGcGGGCCa -3' miRNA: 3'- -GCGG--CGUCU--------UGGGca----GAGGCaUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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