Results 101 - 120 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 38198 | 0.66 | 0.851757 |
Target: 5'- gCGUCGCGcGGCCCGauagcggCUCCGgucGCCg -3' miRNA: 3'- -GCGGCGUcUUGGGCa------GAGGCaucCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 3074 | 0.66 | 0.854791 |
Target: 5'- uCGCCGCgacuggcggcggccgAGGACCCGUUcgggcgauUCCc--GGCCc -3' miRNA: 3'- -GCGGCG---------------UCUUGGGCAG--------AGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 146977 | 0.66 | 0.857047 |
Target: 5'- gGCUGCGGAGCCUc-CUCgagaaucuuuagcaCGUGGGCg -3' miRNA: 3'- gCGGCGUCUUGGGcaGAG--------------GCAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 158997 | 0.66 | 0.858541 |
Target: 5'- cCGgCGCAGGACCCaugccaggagcagGUCUCCGcgcGCa -3' miRNA: 3'- -GCgGCGUCUUGGG-------------CAGAGGCaucCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 147698 | 0.66 | 0.859285 |
Target: 5'- uCGCCGCAcgcGAuuGCCCGUgUCgGUAGa-- -3' miRNA: 3'- -GCGGCGU---CU--UGGGCAgAGgCAUCcgg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 126393 | 0.66 | 0.828078 |
Target: 5'- uCGCCGaggagaGGcAAgUCGUCUCCGc-GGCCu -3' miRNA: 3'- -GCGGCg-----UC-UUgGGCAGAGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 104334 | 0.66 | 0.828078 |
Target: 5'- aCGCCGCuuacgaggAGGugCCG-CUCagGcGGGCCg -3' miRNA: 3'- -GCGGCG--------UCUugGGCaGAGg-CaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 35590 | 0.67 | 0.784482 |
Target: 5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3' miRNA: 3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 92566 | 0.67 | 0.785373 |
Target: 5'- aGuuGCGGGACUCGa--CCG-AGGCCu -3' miRNA: 3'- gCggCGUCUUGGGCagaGGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 82175 | 0.67 | 0.785373 |
Target: 5'- uGCCGUgcGGCCgGUCggCGgcGGCCa -3' miRNA: 3'- gCGGCGucUUGGgCAGagGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 42620 | 0.67 | 0.797698 |
Target: 5'- gGCCGCGGAcGCCCGguccgCUgCGUAcccccaucgcgcgccGGCa -3' miRNA: 3'- gCGGCGUCU-UGGGCa----GAgGCAU---------------CCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 21162 | 0.67 | 0.802034 |
Target: 5'- uCGCCGUAGucACCCGaucccagCUCCGaUGuagcgacaucgucGGCCg -3' miRNA: 3'- -GCGGCGUCu-UGGGCa------GAGGC-AU-------------CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 141466 | 0.67 | 0.802897 |
Target: 5'- aGCgGCGGGGCCUcUUUCCaccGGCCg -3' miRNA: 3'- gCGgCGUCUUGGGcAGAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 109383 | 0.67 | 0.802897 |
Target: 5'- gGCCGuCGGAACCUG-UUCUu--GGCCg -3' miRNA: 3'- gCGGC-GUCUUGGGCaGAGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 128457 | 0.67 | 0.802897 |
Target: 5'- aGCCGC---GCCCGUCUUuggCGUcGGCa -3' miRNA: 3'- gCGGCGucuUGGGCAGAG---GCAuCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 90438 | 0.67 | 0.802897 |
Target: 5'- uCGCCGUAGAGaUCG-CUCagGUGGGCg -3' miRNA: 3'- -GCGGCGUCUUgGGCaGAGg-CAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 72778 | 0.67 | 0.811445 |
Target: 5'- uGgCGCAGAACUCGUaggucaUCCc--GGCCa -3' miRNA: 3'- gCgGCGUCUUGGGCAg-----AGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 108 | 0.67 | 0.811445 |
Target: 5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3' miRNA: 3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 95802 | 0.66 | 0.816502 |
Target: 5'- cCGCCGCuuacgucgGGGGCCUGcgcaaggccgccgCUCCGUccAGGCa -3' miRNA: 3'- -GCGGCG--------UCUUGGGCa------------GAGGCA--UCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 127849 | 0.66 | 0.817339 |
Target: 5'- gGCCGgcggucUAGAACCCGgcgcgcgaauggggUCUCCGUc-GCCg -3' miRNA: 3'- gCGGC------GUCUUGGGC--------------AGAGGCAucCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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