Results 121 - 127 of 127 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24340 | 5' | -58.6 | NC_005264.1 | + | 141466 | 0.67 | 0.802897 |
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Target: 5'- aGCgGCGGGGCCUcUUUCCaccGGCCg -3' miRNA: 3'- gCGgCGUCUUGGGcAGAGGcauCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 109383 | 0.67 | 0.802897 |
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Target: 5'- gGCCGuCGGAACCUG-UUCUu--GGCCg -3' miRNA: 3'- gCGGC-GUCUUGGGCaGAGGcauCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 128457 | 0.67 | 0.802897 |
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Target: 5'- aGCCGC---GCCCGUCUUuggCGUcGGCa -3' miRNA: 3'- gCGGCGucuUGGGCAGAG---GCAuCCGg -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 90438 | 0.67 | 0.802897 |
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Target: 5'- uCGCCGUAGAGaUCG-CUCagGUGGGCg -3' miRNA: 3'- -GCGGCGUCUUgGGCaGAGg-CAUCCGg -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 72778 | 0.67 | 0.811445 |
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Target: 5'- uGgCGCAGAACUCGUaggucaUCCc--GGCCa -3' miRNA: 3'- gCgGCGUCUUGGGCAg-----AGGcauCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 108 | 0.67 | 0.811445 |
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Target: 5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3' miRNA: 3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5' |
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| 24340 | 5' | -58.6 | NC_005264.1 | + | 98306 | 0.66 | 0.859285 |
|
Target: 5'- -aUCGCGGAACCCccCUCCGc-GGCg -3' miRNA: 3'- gcGGCGUCUUGGGcaGAGGCauCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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