miRNA display CGI


Results 101 - 120 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 133372 0.66 0.836147
Target:  5'- gCGCUGCAccGCCCcccaaUCCGcgugGGGCCg -3'
miRNA:   3'- -GCGGCGUcuUGGGcag--AGGCa---UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 144827 0.66 0.836147
Target:  5'- uGaCCGCGGccGACCCGcCgCCGUcAGaGCCg -3'
miRNA:   3'- gC-GGCGUC--UUGGGCaGaGGCA-UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 18520 0.66 0.836147
Target:  5'- uGCCGaucgGGGGCgCCGUCUCCcccugaGGGCg -3'
miRNA:   3'- gCGGCg---UCUUG-GGCAGAGGca----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 106355 0.66 0.841692
Target:  5'- uGCCGCuuggcgcgguuAGAuuucuccgcguucuACCCGUgUCUGUAcGCCg -3'
miRNA:   3'- gCGGCG-----------UCU--------------UGGGCAgAGGCAUcCGG- -5'
24340 5' -58.6 NC_005264.1 + 120536 0.66 0.844042
Target:  5'- aCGCCGCuGGcuGCgCCGUUUUUugGGGCCc -3'
miRNA:   3'- -GCGGCGuCU--UG-GGCAGAGGcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 1577 0.67 0.811445
Target:  5'- gGCUGCAGGGaCC-UCUCgGUGGGgCa -3'
miRNA:   3'- gCGGCGUCUUgGGcAGAGgCAUCCgG- -5'
24340 5' -58.6 NC_005264.1 + 139719 0.67 0.811445
Target:  5'- gGCCGagcauuaGGGACCgGggcCUCCGgcGGCa -3'
miRNA:   3'- gCGGCg------UCUUGGgCa--GAGGCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 118815 0.67 0.794203
Target:  5'- gGCCGUcGAugU--UCUCCGUAuGGCCc -3'
miRNA:   3'- gCGGCGuCUugGgcAGAGGCAU-CCGG- -5'
24340 5' -58.6 NC_005264.1 + 29812 0.68 0.709804
Target:  5'- cCGCCGCGGAAagggucuuCCUGUCuaucuugUCUGUGGcGCUc -3'
miRNA:   3'- -GCGGCGUCUU--------GGGCAG-------AGGCAUC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 33803 0.68 0.720403
Target:  5'- aCGCCGCuuuGGACCgGcUCgCCGgcaAGGCUg -3'
miRNA:   3'- -GCGGCGu--CUUGGgC-AGaGGCa--UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 3201 0.68 0.729964
Target:  5'- gGCCGCGuu-CCUGUCUUCGcguagccaccUAGGCUg -3'
miRNA:   3'- gCGGCGUcuuGGGCAGAGGC----------AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 107124 0.68 0.739446
Target:  5'- aGCCGCGGAcuCCUGUCUa-GgcGGCg -3'
miRNA:   3'- gCGGCGUCUu-GGGCAGAggCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 126679 0.68 0.74884
Target:  5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3'
miRNA:   3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 64077 0.68 0.758138
Target:  5'- aGCCGCAGcaGAgCCGcCUUCc-GGGCCa -3'
miRNA:   3'- gCGGCGUC--UUgGGCaGAGGcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 105244 0.67 0.767332
Target:  5'- gGCCGCGGAGCaaaCGUUuagagCCau-GGCCa -3'
miRNA:   3'- gCGGCGUCUUGg--GCAGa----GGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 104209 0.67 0.776413
Target:  5'- uCGCCGCAGAGCaCgCGUCgCac-GGGUCa -3'
miRNA:   3'- -GCGGCGUCUUG-G-GCAGaGgcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 125264 0.67 0.776413
Target:  5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3'
miRNA:   3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 154617 0.67 0.784482
Target:  5'- uGCUGCGGcuucggccgauGGCCgCGUCUCCGUguccccgGGGUUc -3'
miRNA:   3'- gCGGCGUC-----------UUGG-GCAGAGGCA-------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 146487 0.67 0.785373
Target:  5'- ---aGCAGAAgCCuaugGUCUCCcUGGGCCg -3'
miRNA:   3'- gcggCGUCUUgGG----CAGAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 161647 0.67 0.791568
Target:  5'- gGCCGCGGAcGCCCGguccgCUgCGUAccccaucgcgcgccGGCa -3'
miRNA:   3'- gCGGCGUCU-UGGGCa----GAgGCAU--------------CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.