Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24340 | 5' | -58.6 | NC_005264.1 | + | 94 | 0.7 | 0.622232 |
Target: 5'- uCGCCcuGCAGAgauagcuaGCCCauggagCUCCGcGGGCCa -3' miRNA: 3'- -GCGG--CGUCU--------UGGGca----GAGGCaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 108 | 0.67 | 0.811445 |
Target: 5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3' miRNA: 3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 1509 | 0.66 | 0.844042 |
Target: 5'- aCGCCGCuGGcuGCgCCGUUUUUugGGGCCc -3' miRNA: 3'- -GCGGCGuCU--UG-GGCAGAGGcaUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 1577 | 0.67 | 0.811445 |
Target: 5'- gGCUGCAGGGaCC-UCUCgGUGGGgCa -3' miRNA: 3'- gCGGCGUCUUgGGcAGAGgCAUCCgG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 2433 | 0.73 | 0.450887 |
Target: 5'- gGCCGCGGAcacguccguguGCCCGUUcuucCCGgagcUGGGCCu -3' miRNA: 3'- gCGGCGUCU-----------UGGGCAGa---GGC----AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 2728 | 0.71 | 0.572931 |
Target: 5'- cCGCgGCcGGGCCCGUCUUC-UAGGUUu -3' miRNA: 3'- -GCGgCGuCUUGGGCAGAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 3074 | 0.66 | 0.854791 |
Target: 5'- uCGCCGCgacuggcggcggccgAGGACCCGUUcgggcgauUCCc--GGCCc -3' miRNA: 3'- -GCGGCG---------------UCUUGGGCAG--------AGGcauCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 3201 | 0.68 | 0.729964 |
Target: 5'- gGCCGCGuu-CCUGUCUUCGcguagccaccUAGGCUg -3' miRNA: 3'- gCGGCGUcuuGGGCAGAGGC----------AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 3273 | 0.72 | 0.515113 |
Target: 5'- aGCCGCAGcGCCaCGUC-CC-UGGGCg -3' miRNA: 3'- gCGGCGUCuUGG-GCAGaGGcAUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 4765 | 0.7 | 0.642048 |
Target: 5'- cCGCCGCGcGAACUCGgccagUCCGacUGGGUCg -3' miRNA: 3'- -GCGGCGU-CUUGGGCag---AGGC--AUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 5020 | 0.7 | 0.602443 |
Target: 5'- uCGCCGCGGAGuaCGUCaCCGggacgAGGCa -3' miRNA: 3'- -GCGGCGUCUUggGCAGaGGCa----UCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 6237 | 0.67 | 0.776413 |
Target: 5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3' miRNA: 3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 7324 | 0.69 | 0.701077 |
Target: 5'- aGCCGCGGGAgaucCCgCGUCUUCGUccuccGCCu -3' miRNA: 3'- gCGGCGUCUU----GG-GCAGAGGCAuc---CGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 7652 | 0.68 | 0.74884 |
Target: 5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3' miRNA: 3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 12690 | 0.66 | 0.851757 |
Target: 5'- cCGUCGCGGAccacGCCCGggaccggaUCC-UAGGaCCg -3' miRNA: 3'- -GCGGCGUCU----UGGGCag------AGGcAUCC-GG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 13190 | 0.7 | 0.642048 |
Target: 5'- gCGCUGCGcgcGGAUCCGUCgccgccgCCGUcgccGGGCUg -3' miRNA: 3'- -GCGGCGU---CUUGGGCAGa------GGCA----UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 16437 | 0.71 | 0.582738 |
Target: 5'- uGCCGCGGGGCCUG-C-CCGcGGGUg -3' miRNA: 3'- gCGGCGUCUUGGGCaGaGGCaUCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 18520 | 0.66 | 0.836147 |
Target: 5'- uGCCGaucgGGGGCgCCGUCUCCcccugaGGGCg -3' miRNA: 3'- gCGGCg---UCUUG-GGCAGAGGca----UCCGg -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 20846 | 0.66 | 0.84715 |
Target: 5'- uGCCGUauuccacagucuGGAGCCUgcuacuccaugcccuGUUUCCGUuaaacaugAGGCCu -3' miRNA: 3'- gCGGCG------------UCUUGGG---------------CAGAGGCA--------UCCGG- -5' |
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24340 | 5' | -58.6 | NC_005264.1 | + | 21087 | 0.7 | 0.612331 |
Target: 5'- uGCCGU---GCUCGcCUCCGaGGGCCu -3' miRNA: 3'- gCGGCGucuUGGGCaGAGGCaUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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