miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 94 0.7 0.622232
Target:  5'- uCGCCcuGCAGAgauagcuaGCCCauggagCUCCGcGGGCCa -3'
miRNA:   3'- -GCGG--CGUCU--------UGGGca----GAGGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 108 0.67 0.811445
Target:  5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3'
miRNA:   3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 1509 0.66 0.844042
Target:  5'- aCGCCGCuGGcuGCgCCGUUUUUugGGGCCc -3'
miRNA:   3'- -GCGGCGuCU--UG-GGCAGAGGcaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 1577 0.67 0.811445
Target:  5'- gGCUGCAGGGaCC-UCUCgGUGGGgCa -3'
miRNA:   3'- gCGGCGUCUUgGGcAGAGgCAUCCgG- -5'
24340 5' -58.6 NC_005264.1 + 2433 0.73 0.450887
Target:  5'- gGCCGCGGAcacguccguguGCCCGUUcuucCCGgagcUGGGCCu -3'
miRNA:   3'- gCGGCGUCU-----------UGGGCAGa---GGC----AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 2728 0.71 0.572931
Target:  5'- cCGCgGCcGGGCCCGUCUUC-UAGGUUu -3'
miRNA:   3'- -GCGgCGuCUUGGGCAGAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 3074 0.66 0.854791
Target:  5'- uCGCCGCgacuggcggcggccgAGGACCCGUUcgggcgauUCCc--GGCCc -3'
miRNA:   3'- -GCGGCG---------------UCUUGGGCAG--------AGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 3201 0.68 0.729964
Target:  5'- gGCCGCGuu-CCUGUCUUCGcguagccaccUAGGCUg -3'
miRNA:   3'- gCGGCGUcuuGGGCAGAGGC----------AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 3273 0.72 0.515113
Target:  5'- aGCCGCAGcGCCaCGUC-CC-UGGGCg -3'
miRNA:   3'- gCGGCGUCuUGG-GCAGaGGcAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 4765 0.7 0.642048
Target:  5'- cCGCCGCGcGAACUCGgccagUCCGacUGGGUCg -3'
miRNA:   3'- -GCGGCGU-CUUGGGCag---AGGC--AUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 5020 0.7 0.602443
Target:  5'- uCGCCGCGGAGuaCGUCaCCGggacgAGGCa -3'
miRNA:   3'- -GCGGCGUCUUggGCAGaGGCa----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 6237 0.67 0.776413
Target:  5'- cCGCCGCGaGACuugCCGcCUCCGUcgcGGUCg -3'
miRNA:   3'- -GCGGCGUcUUG---GGCaGAGGCAu--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 7324 0.69 0.701077
Target:  5'- aGCCGCGGGAgaucCCgCGUCUUCGUccuccGCCu -3'
miRNA:   3'- gCGGCGUCUU----GG-GCAGAGGCAuc---CGG- -5'
24340 5' -58.6 NC_005264.1 + 7652 0.68 0.74884
Target:  5'- aCGCCGCcugccggcucggAGGGCUCGgcCUCCaUGGGCUc -3'
miRNA:   3'- -GCGGCG------------UCUUGGGCa-GAGGcAUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 12690 0.66 0.851757
Target:  5'- cCGUCGCGGAccacGCCCGggaccggaUCC-UAGGaCCg -3'
miRNA:   3'- -GCGGCGUCU----UGGGCag------AGGcAUCC-GG- -5'
24340 5' -58.6 NC_005264.1 + 13190 0.7 0.642048
Target:  5'- gCGCUGCGcgcGGAUCCGUCgccgccgCCGUcgccGGGCUg -3'
miRNA:   3'- -GCGGCGU---CUUGGGCAGa------GGCA----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 16437 0.71 0.582738
Target:  5'- uGCCGCGGGGCCUG-C-CCGcGGGUg -3'
miRNA:   3'- gCGGCGUCUUGGGCaGaGGCaUCCGg -5'
24340 5' -58.6 NC_005264.1 + 18520 0.66 0.836147
Target:  5'- uGCCGaucgGGGGCgCCGUCUCCcccugaGGGCg -3'
miRNA:   3'- gCGGCg---UCUUG-GGCAGAGGca----UCCGg -5'
24340 5' -58.6 NC_005264.1 + 20846 0.66 0.84715
Target:  5'- uGCCGUauuccacagucuGGAGCCUgcuacuccaugcccuGUUUCCGUuaaacaugAGGCCu -3'
miRNA:   3'- gCGGCG------------UCUUGGG---------------CAGAGGCA--------UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 21087 0.7 0.612331
Target:  5'- uGCCGU---GCUCGcCUCCGaGGGCCu -3'
miRNA:   3'- gCGGCGucuUGGGCaGAGGCaUCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.