miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24340 5' -58.6 NC_005264.1 + 133372 0.66 0.836147
Target:  5'- gCGCUGCAccGCCCcccaaUCCGcgugGGGCCg -3'
miRNA:   3'- -GCGGCGUcuUGGGcag--AGGCa---UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 144827 0.66 0.836147
Target:  5'- uGaCCGCGGccGACCCGcCgCCGUcAGaGCCg -3'
miRNA:   3'- gC-GGCGUC--UUGGGCaGaGGCA-UC-CGG- -5'
24340 5' -58.6 NC_005264.1 + 157031 0.66 0.834547
Target:  5'- cCGCCGCcGGACUauugaacgCCGUGGGCg -3'
miRNA:   3'- -GCGGCGuCUUGGgcaga---GGCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 38004 0.66 0.834547
Target:  5'- cCGCCGCcGGACUauugaacgCCGUGGGCg -3'
miRNA:   3'- -GCGGCGuCUUGGgcaga---GGCAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 155074 0.66 0.828078
Target:  5'- --aCGCuGAAgCCGUcCUCUGUggggAGGCCa -3'
miRNA:   3'- gcgGCGuCUUgGGCA-GAGGCA----UCCGG- -5'
24340 5' -58.6 NC_005264.1 + 126393 0.66 0.828078
Target:  5'- uCGCCGaggagaGGcAAgUCGUCUCCGc-GGCCu -3'
miRNA:   3'- -GCGGCg-----UC-UUgGGCAGAGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 104334 0.66 0.828078
Target:  5'- aCGCCGCuuacgaggAGGugCCG-CUCagGcGGGCCg -3'
miRNA:   3'- -GCGGCG--------UCUugGGCaGAGg-CaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 100383 0.66 0.828078
Target:  5'- uGCUGCGGAugCCG-CUgcugcgccCCGUAuuGGUCg -3'
miRNA:   3'- gCGGCGUCUugGGCaGA--------GGCAU--CCGG- -5'
24340 5' -58.6 NC_005264.1 + 131717 0.66 0.819842
Target:  5'- cCGUCGCGGAccacGCCCGgaccggaUCC-UAGGaCCg -3'
miRNA:   3'- -GCGGCGUCU----UGGGCag-----AGGcAUCC-GG- -5'
24340 5' -58.6 NC_005264.1 + 127849 0.66 0.817339
Target:  5'- gGCCGgcggucUAGAACCCGgcgcgcgaauggggUCUCCGUc-GCCg -3'
miRNA:   3'- gCGGC------GUCUUGGGC--------------AGAGGCAucCGG- -5'
24340 5' -58.6 NC_005264.1 + 95802 0.66 0.816502
Target:  5'- cCGCCGCuuacgucgGGGGCCUGcgcaaggccgccgCUCCGUccAGGCa -3'
miRNA:   3'- -GCGGCG--------UCUUGGGCa------------GAGGCA--UCCGg -5'
24340 5' -58.6 NC_005264.1 + 136845 0.67 0.811445
Target:  5'- gCGCCGauacuGuACCCGUCUgCCG-AGGUUa -3'
miRNA:   3'- -GCGGCgu---CuUGGGCAGA-GGCaUCCGG- -5'
24340 5' -58.6 NC_005264.1 + 72778 0.67 0.811445
Target:  5'- uGgCGCAGAACUCGUaggucaUCCc--GGCCa -3'
miRNA:   3'- gCgGCGUCUUGGGCAg-----AGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 1577 0.67 0.811445
Target:  5'- gGCUGCAGGGaCC-UCUCgGUGGGgCa -3'
miRNA:   3'- gCGGCGUCUUgGGcAGAGgCAUCCgG- -5'
24340 5' -58.6 NC_005264.1 + 108 0.67 0.811445
Target:  5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3'
miRNA:   3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 119135 0.67 0.811445
Target:  5'- gGCCGCucGAGuuuccuuuuCCCGcUCcCCGgcGGCCg -3'
miRNA:   3'- gCGGCGu-CUU---------GGGC-AGaGGCauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 139719 0.67 0.811445
Target:  5'- gGCCGagcauuaGGGACCgGggcCUCCGgcGGCa -3'
miRNA:   3'- gCGGCg------UCUUGGgCa--GAGGCauCCGg -5'
24340 5' -58.6 NC_005264.1 + 109383 0.67 0.802897
Target:  5'- gGCCGuCGGAACCUG-UUCUu--GGCCg -3'
miRNA:   3'- gCGGC-GUCUUGGGCaGAGGcauCCGG- -5'
24340 5' -58.6 NC_005264.1 + 90438 0.67 0.802897
Target:  5'- uCGCCGUAGAGaUCG-CUCagGUGGGCg -3'
miRNA:   3'- -GCGGCGUCUUgGGCaGAGg-CAUCCGg -5'
24340 5' -58.6 NC_005264.1 + 128457 0.67 0.802897
Target:  5'- aGCCGC---GCCCGUCUUuggCGUcGGCa -3'
miRNA:   3'- gCGGCGucuUGGGCAGAG---GCAuCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.