miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24341 3' -58.2 NC_005264.1 + 100068 0.66 0.80653
Target:  5'- gGUUUGCGgGGccuaGGGCGUagCAUGGCg -3'
miRNA:   3'- -CGAACGCgCCa---CCUGCGgaGUACCGa -5'
24341 3' -58.2 NC_005264.1 + 16376 0.67 0.797738
Target:  5'- uGC-UGgGgGGgaggGGAUGCC-CGUGGCg -3'
miRNA:   3'- -CGaACgCgCCa---CCUGCGGaGUACCGa -5'
24341 3' -58.2 NC_005264.1 + 60266 0.67 0.7888
Target:  5'- cGCgaGCuGCGGUGaGCGCCgcgUcgGGCa -3'
miRNA:   3'- -CGaaCG-CGCCACcUGCGGa--GuaCCGa -5'
24341 3' -58.2 NC_005264.1 + 74106 0.67 0.779725
Target:  5'- ---gGCGCGGUcGACGCUgUCGcGGCUg -3'
miRNA:   3'- cgaaCGCGCCAcCUGCGG-AGUaCCGA- -5'
24341 3' -58.2 NC_005264.1 + 86963 0.68 0.745099
Target:  5'- uGCUUGCacGgGGacgagacccuguuucUGGagucgcaGCGCCUCGUGGCg -3'
miRNA:   3'- -CGAACG--CgCC---------------ACC-------UGCGGAGUACCGa -5'
24341 3' -58.2 NC_005264.1 + 21524 0.68 0.742228
Target:  5'- aGUggGCGCaGGUGuaguuGACGCUUCGUGgGCg -3'
miRNA:   3'- -CGaaCGCG-CCAC-----CUGCGGAGUAC-CGa -5'
24341 3' -58.2 NC_005264.1 + 38017 0.68 0.732598
Target:  5'- -aUUGaaCGCcGUGGGCGCCUCgGUGGUg -3'
miRNA:   3'- cgAAC--GCGcCACCUGCGGAG-UACCGa -5'
24341 3' -58.2 NC_005264.1 + 157044 0.68 0.732598
Target:  5'- -aUUGaaCGCcGUGGGCGCCUCgGUGGUg -3'
miRNA:   3'- cgAAC--GCGcCACCUGCGGAG-UACCGa -5'
24341 3' -58.2 NC_005264.1 + 54441 0.68 0.722883
Target:  5'- uGCUgGCGCGGgGGAUGCC-CAccgccgagcUGGUa -3'
miRNA:   3'- -CGAaCGCGCCaCCUGCGGaGU---------ACCGa -5'
24341 3' -58.2 NC_005264.1 + 155951 0.68 0.713092
Target:  5'- cGCUgggacUGCGCGGcucgcGGACGC-UC-UGGCUg -3'
miRNA:   3'- -CGA-----ACGCGCCa----CCUGCGgAGuACCGA- -5'
24341 3' -58.2 NC_005264.1 + 6310 0.68 0.713092
Target:  5'- aCUUGCGCGGc-GAgGCUUCgcGUGGCg -3'
miRNA:   3'- cGAACGCGCCacCUgCGGAG--UACCGa -5'
24341 3' -58.2 NC_005264.1 + 108610 0.68 0.690333
Target:  5'- ---cGCGCGG-GGcCGCCUCGacacaggccucuauUGGCg -3'
miRNA:   3'- cgaaCGCGCCaCCuGCGGAGU--------------ACCGa -5'
24341 3' -58.2 NC_005264.1 + 12912 0.7 0.602833
Target:  5'- cCUUGCGaUGGUGugcGugGCCaUCGUGGCc -3'
miRNA:   3'- cGAACGC-GCCAC---CugCGG-AGUACCGa -5'
24341 3' -58.2 NC_005264.1 + 16560 0.7 0.602833
Target:  5'- ---aGCGCGGUGGgcgGCGCCgg--GGCg -3'
miRNA:   3'- cgaaCGCGCCACC---UGCGGaguaCCGa -5'
24341 3' -58.2 NC_005264.1 + 94949 0.7 0.602833
Target:  5'- ---cGCGuCGGUGGugGgCCUCGcGGCc -3'
miRNA:   3'- cgaaCGC-GCCACCugC-GGAGUaCCGa -5'
24341 3' -58.2 NC_005264.1 + 146594 0.7 0.572781
Target:  5'- -gUUGCGgGGUGGGCGUacacagaaCUgAUGGCa -3'
miRNA:   3'- cgAACGCgCCACCUGCG--------GAgUACCGa -5'
24341 3' -58.2 NC_005264.1 + 140131 0.71 0.562837
Target:  5'- cGCUUGCGCGc----CGCaCUCGUGGCUa -3'
miRNA:   3'- -CGAACGCGCcaccuGCG-GAGUACCGA- -5'
24341 3' -58.2 NC_005264.1 + 56820 0.73 0.44865
Target:  5'- cGC-UGCGCGGcGGcccuagcuaGCGgCUCGUGGCUg -3'
miRNA:   3'- -CGaACGCGCCaCC---------UGCgGAGUACCGA- -5'
24341 3' -58.2 NC_005264.1 + 22207 0.73 0.430845
Target:  5'- gGCgUGCGCGGcaagUGGAgucguCGCCUCGUcGGCg -3'
miRNA:   3'- -CGaACGCGCC----ACCU-----GCGGAGUA-CCGa -5'
24341 3' -58.2 NC_005264.1 + 70183 0.73 0.421232
Target:  5'- --cUGCGaGGUGGACGCCUUAcgcacauucgugcUGGCa -3'
miRNA:   3'- cgaACGCgCCACCUGCGGAGU-------------ACCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.