Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24341 | 5' | -57.6 | NC_005264.1 | + | 161388 | 0.68 | 0.71183 |
Target: 5'- --cGCCGgcgaugGCCGGUGCUGgcuccCGCGGAg- -3' miRNA: 3'- cauCGGUa-----CGGCCGCGAC-----GCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 161278 | 0.67 | 0.766657 |
Target: 5'- cGUAGUCcgGCCGGgGCccgccuauugccgGCGCGGu-- -3' miRNA: 3'- -CAUCGGuaCGGCCgCGa------------CGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 158568 | 0.71 | 0.528543 |
Target: 5'- -cAGCCAUGCaGGCcgaacagacucGCUGCGCGGc-- -3' miRNA: 3'- caUCGGUACGgCCG-----------CGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 156065 | 1.06 | 0.002789 |
Target: 5'- gGUAGCCAUGCCGGCGCUGCGCGAAUAc -3' miRNA: 3'- -CAUCGGUACGGCCGCGACGCGCUUAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 155781 | 0.68 | 0.721825 |
Target: 5'- cGgcGCCG-GCCGGCGCcgucgccgcuUGCGCgcaGAAUAc -3' miRNA: 3'- -CauCGGUaCGGCCGCG----------ACGCG---CUUAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 155718 | 0.68 | 0.721825 |
Target: 5'- -cGGCuCAgucgGCCGGCGCUaacgGCGCGu--- -3' miRNA: 3'- caUCG-GUa---CGGCCGCGA----CGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 150862 | 0.72 | 0.478015 |
Target: 5'- --uGCCGUGCCGcGCGCggcaagacauggGCGCGAc-- -3' miRNA: 3'- cauCGGUACGGC-CGCGa-----------CGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 148446 | 0.69 | 0.619869 |
Target: 5'- gGUGGUCAgaacaGCCGGCGCc-CGCGAGg- -3' miRNA: 3'- -CAUCGGUa----CGGCCGCGacGCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 139438 | 0.69 | 0.661007 |
Target: 5'- gGUGGCCAUGUCGGCgGCgGUauaacucguucGCGAGa- -3' miRNA: 3'- -CAUCGGUACGGCCG-CGaCG-----------CGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 138191 | 0.69 | 0.637364 |
Target: 5'- gGUGGCCAgaaCCGuggggauuaagcauGCGCUGCGCGGu-- -3' miRNA: 3'- -CAUCGGUac-GGC--------------CGCGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 137936 | 0.72 | 0.470449 |
Target: 5'- uUGGUgGUGCCGGUaucGUUGCGCGAc-- -3' miRNA: 3'- cAUCGgUACGGCCG---CGACGCGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 131720 | 0.66 | 0.815958 |
Target: 5'- -cGGCguUGCUGGCGCUcugGCGCu---- -3' miRNA: 3'- caUCGguACGGCCGCGA---CGCGcuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 126291 | 0.66 | 0.832203 |
Target: 5'- -cGGCCAUGCCgcuuucgGGCGCgcgGC-CGAu-- -3' miRNA: 3'- caUCGGUACGG-------CCGCGa--CGcGCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 126098 | 0.69 | 0.619869 |
Target: 5'- -cGGCCGgcGCCGucGCGCUGCGgGGAa- -3' miRNA: 3'- caUCGGUa-CGGC--CGCGACGCgCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 122778 | 0.66 | 0.824587 |
Target: 5'- -gGGCCucuUGCCgccggGGCGCUGCGgGc--- -3' miRNA: 3'- caUCGGu--ACGG-----CCGCGACGCgCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 120733 | 0.69 | 0.640451 |
Target: 5'- -aGGaCgGUGCCGGCGaCUGCGaCGAc-- -3' miRNA: 3'- caUC-GgUACGGCCGC-GACGC-GCUuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 120284 | 0.7 | 0.609588 |
Target: 5'- -cGGCaaggcUGCCGGCGCgaagacGCGCGGAa- -3' miRNA: 3'- caUCGgu---ACGGCCGCGa-----CGCGCUUau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 120191 | 0.67 | 0.760935 |
Target: 5'- --cGCCAgucUGCCGGCGC-GCGauggGggUAc -3' miRNA: 3'- cauCGGU---ACGGCCGCGaCGCg---CuuAU- -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 119167 | 0.67 | 0.760935 |
Target: 5'- -cGGCCGccuuaacGCCGGCGCgcaGCGCGc--- -3' miRNA: 3'- caUCGGUa------CGGCCGCGa--CGCGCuuau -5' |
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24341 | 5' | -57.6 | NC_005264.1 | + | 117611 | 0.71 | 0.518659 |
Target: 5'- -cGGCCAUGCCuaCGCUGCGCu---- -3' miRNA: 3'- caUCGGUACGGccGCGACGCGcuuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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