Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 155542 | 1.1 | 0.004906 |
Target: 5'- cCUAUCCCUAAGCCAUACGCACUGGCGg -3' miRNA: 3'- -GAUAGGGAUUCGGUAUGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 34060 | 0.81 | 0.320816 |
Target: 5'- uUAUCCCguuguggAAGCC--GCGCACUGGCGc -3' miRNA: 3'- gAUAGGGa------UUCGGuaUGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 114789 | 0.78 | 0.466525 |
Target: 5'- aUGUCCCU-GGCCAaugcuccaUGCGCAUUGGCc -3' miRNA: 3'- gAUAGGGAuUCGGU--------AUGCGUGACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 61411 | 0.74 | 0.691809 |
Target: 5'- -gAUCCCUaAAGCgAcaaccgGCGCGCUGGUGg -3' miRNA: 3'- gaUAGGGA-UUCGgUa-----UGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 134671 | 0.73 | 0.726631 |
Target: 5'- aUGUCCgUcugucugccguucaaGAGCCGccCGCACUGGCGa -3' miRNA: 3'- gAUAGGgA---------------UUCGGUauGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 142254 | 0.71 | 0.818329 |
Target: 5'- -cAUCCCUAAcGaCUAUggaacacccGCGCGCUGGCa -3' miRNA: 3'- gaUAGGGAUU-C-GGUA---------UGCGUGACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 55137 | 0.71 | 0.827079 |
Target: 5'- ---aCCCc--GCCGUGCGCuguGCUGGCGc -3' miRNA: 3'- gauaGGGauuCGGUAUGCG---UGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 12264 | 0.71 | 0.835642 |
Target: 5'- -cGUCCCUGAgaugacgauGCCGUAC-C-CUGGCGg -3' miRNA: 3'- gaUAGGGAUU---------CGGUAUGcGuGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 133698 | 0.71 | 0.852177 |
Target: 5'- -gGUCCUU--GCCGccGCGCACUGGUGc -3' miRNA: 3'- gaUAGGGAuuCGGUa-UGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 65714 | 0.7 | 0.882679 |
Target: 5'- cCUGUagCCCUugagcucagAGGCCAacuCGCGCUGGCc -3' miRNA: 3'- -GAUA--GGGA---------UUCGGUau-GCGUGACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 89265 | 0.7 | 0.882679 |
Target: 5'- -gGUCUUUAGGCCGUACuuaaauGCAgUGGUGa -3' miRNA: 3'- gaUAGGGAUUCGGUAUG------CGUgACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 83242 | 0.69 | 0.915534 |
Target: 5'- ----gUCUAGGCCGccgcugAUGCGCUGGCGc -3' miRNA: 3'- gauagGGAUUCGGUa-----UGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 39420 | 0.68 | 0.932272 |
Target: 5'- uUAUCUCgu-GCCAgacUACuaGCUGGCGg -3' miRNA: 3'- gAUAGGGauuCGGU---AUGcgUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 128444 | 0.68 | 0.941704 |
Target: 5'- --uUCCCUGAGCUcgAgcCGCGCccgucuuUGGCGu -3' miRNA: 3'- gauAGGGAUUCGGuaU--GCGUG-------ACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 155113 | 0.68 | 0.946754 |
Target: 5'- ---aCCCUGcauauGGCCAUGCGCAgCguuagggaGGCGa -3' miRNA: 3'- gauaGGGAU-----UCGGUAUGCGU-Ga-------CCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 100781 | 0.68 | 0.948516 |
Target: 5'- ---gCCC-AAGCCAUGCGCGCccaaaucucuuacgaUGGUa -3' miRNA: 3'- gauaGGGaUUCGGUAUGCGUG---------------ACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 115264 | 0.67 | 0.95903 |
Target: 5'- -cGUCCCcgcGAGCCAUAUcugGCACgaGGCc -3' miRNA: 3'- gaUAGGGa--UUCGGUAUG---CGUGa-CCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 138624 | 0.67 | 0.95903 |
Target: 5'- aCUAUCCCg-------GCGCGCUGGCu -3' miRNA: 3'- -GAUAGGGauucgguaUGCGUGACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 7719 | 0.66 | 0.974897 |
Target: 5'- --cUCCCUAacgcugcgcauGGCCAUAUGCAggguuaacaugcUUGGCc -3' miRNA: 3'- gauAGGGAU-----------UCGGUAUGCGU------------GACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 145843 | 0.66 | 0.974897 |
Target: 5'- -cGUCCCUGAGUCuguUugG-ACcGGCGg -3' miRNA: 3'- gaUAGGGAUUCGGu--AugCgUGaCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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