Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24342 | 3' | -52.6 | NC_005264.1 | + | 34060 | 0.81 | 0.320816 |
Target: 5'- uUAUCCCguuguggAAGCC--GCGCACUGGCGc -3' miRNA: 3'- gAUAGGGa------UUCGGuaUGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 158238 | 0.66 | 0.977436 |
Target: 5'- ----gCCUAcGCCGccGCgGCGCUGGCGg -3' miRNA: 3'- gauagGGAUuCGGUa-UG-CGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 89125 | 0.66 | 0.977436 |
Target: 5'- ---aCCCgcgcaAGGCCGUcgGUACUGGCGc -3' miRNA: 3'- gauaGGGa----UUCGGUAugCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 137354 | 0.66 | 0.974897 |
Target: 5'- -cAUCCU--AGCCucguucccGUACGC-CUGGCGc -3' miRNA: 3'- gaUAGGGauUCGG--------UAUGCGuGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 7719 | 0.66 | 0.974897 |
Target: 5'- --cUCCCUAacgcugcgcauGGCCAUAUGCAggguuaacaugcUUGGCc -3' miRNA: 3'- gauAGGGAU-----------UCGGUAUGCGU------------GACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 115264 | 0.67 | 0.95903 |
Target: 5'- -cGUCCCcgcGAGCCAUAUcugGCACgaGGCc -3' miRNA: 3'- gaUAGGGa--UUCGGUAUG---CGUGa-CCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 100781 | 0.68 | 0.948516 |
Target: 5'- ---gCCC-AAGCCAUGCGCGCccaaaucucuuacgaUGGUa -3' miRNA: 3'- gauaGGGaUUCGGUAUGCGUG---------------ACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 39420 | 0.68 | 0.932272 |
Target: 5'- uUAUCUCgu-GCCAgacUACuaGCUGGCGg -3' miRNA: 3'- gAUAGGGauuCGGU---AUGcgUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 133698 | 0.71 | 0.852177 |
Target: 5'- -gGUCCUU--GCCGccGCGCACUGGUGc -3' miRNA: 3'- gaUAGGGAuuCGGUa-UGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 12264 | 0.71 | 0.835642 |
Target: 5'- -cGUCCCUGAgaugacgauGCCGUAC-C-CUGGCGg -3' miRNA: 3'- gaUAGGGAUU---------CGGUAUGcGuGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 55137 | 0.71 | 0.827079 |
Target: 5'- ---aCCCc--GCCGUGCGCuguGCUGGCGc -3' miRNA: 3'- gauaGGGauuCGGUAUGCG---UGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 142254 | 0.71 | 0.818329 |
Target: 5'- -cAUCCCUAAcGaCUAUggaacacccGCGCGCUGGCa -3' miRNA: 3'- gaUAGGGAUU-C-GGUA---------UGCGUGACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 134671 | 0.73 | 0.726631 |
Target: 5'- aUGUCCgUcugucugccguucaaGAGCCGccCGCACUGGCGa -3' miRNA: 3'- gAUAGGgA---------------UUCGGUauGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 138624 | 0.67 | 0.95903 |
Target: 5'- aCUAUCCCg-------GCGCGCUGGCu -3' miRNA: 3'- -GAUAGGGauucgguaUGCGUGACCGc -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 145843 | 0.66 | 0.974897 |
Target: 5'- -cGUCCCUGAGUCuguUugG-ACcGGCGg -3' miRNA: 3'- gaUAGGGAUUCGGu--AugCgUGaCCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 39211 | 0.66 | 0.977436 |
Target: 5'- ----gCCUAcGCCGccGCgGCGCUGGCGg -3' miRNA: 3'- gauagGGAUuCGGUa-UG-CGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 102990 | 0.66 | 0.979327 |
Target: 5'- ---aCCgUGgcGGCCugcaccacguauUGCGCGCUGGCGu -3' miRNA: 3'- gauaGGgAU--UCGGu-----------AUGCGUGACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 109055 | 0.66 | 0.98194 |
Target: 5'- -gAUCCCUGaccuggaacagcAGCCcaGCGaUugUGGCGa -3' miRNA: 3'- gaUAGGGAU------------UCGGuaUGC-GugACCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 95555 | 0.66 | 0.98194 |
Target: 5'- ---aCCCUucgAAGCCG-ACGCGCUaGCGc -3' miRNA: 3'- gauaGGGA---UUCGGUaUGCGUGAcCGC- -5' |
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24342 | 3' | -52.6 | NC_005264.1 | + | 155542 | 1.1 | 0.004906 |
Target: 5'- cCUAUCCCUAAGCCAUACGCACUGGCGg -3' miRNA: 3'- -GAUAGGGAUUCGGUAUGCGUGACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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