miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24342 5' -55.9 NC_005264.1 + 152952 0.66 0.903183
Target:  5'- -cCGCCAGGGCUGgGaagGCCgUGGc -3'
miRNA:   3'- caGCGGUUCCGAUgCagaCGGaACCa -5'
24342 5' -55.9 NC_005264.1 + 116427 0.66 0.883114
Target:  5'- gGUCGCUggGG--GCGUCUGgCCgcgGGg -3'
miRNA:   3'- -CAGCGGuuCCgaUGCAGAC-GGaa-CCa -5'
24342 5' -55.9 NC_005264.1 + 122788 0.67 0.85322
Target:  5'- -cCGCCGGGGCgcUGCGg--GCcCUUGGUc -3'
miRNA:   3'- caGCGGUUCCG--AUGCagaCG-GAACCA- -5'
24342 5' -55.9 NC_005264.1 + 29334 0.67 0.85322
Target:  5'- -gCGCCuccugcGGCUacgACGUCUGCCg-GGUa -3'
miRNA:   3'- caGCGGuu----CCGA---UGCAGACGGaaCCA- -5'
24342 5' -55.9 NC_005264.1 + 3762 0.67 0.85322
Target:  5'- -cCGCCGGGGCgcUGCGg--GCcCUUGGUc -3'
miRNA:   3'- caGCGGUUCCG--AUGCagaCG-GAACCA- -5'
24342 5' -55.9 NC_005264.1 + 98426 0.68 0.793378
Target:  5'- aUCGCCGugcccGCgGCGUCgGCCUUGGc -3'
miRNA:   3'- cAGCGGUuc---CGaUGCAGaCGGAACCa -5'
24342 5' -55.9 NC_005264.1 + 144256 0.7 0.726335
Target:  5'- gGUgGCCu-GGCU-CG-CUGCCUUGGg -3'
miRNA:   3'- -CAgCGGuuCCGAuGCaGACGGAACCa -5'
24342 5' -55.9 NC_005264.1 + 14162 0.7 0.686002
Target:  5'- cUCGCCAaccAGGCUAUuUCUcGCCUcGGUg -3'
miRNA:   3'- cAGCGGU---UCCGAUGcAGA-CGGAaCCA- -5'
24342 5' -55.9 NC_005264.1 + 68179 0.72 0.614006
Target:  5'- -cCGCCGcGGCUACGUUUgGgCUUGGUu -3'
miRNA:   3'- caGCGGUuCCGAUGCAGA-CgGAACCA- -5'
24342 5' -55.9 NC_005264.1 + 50495 0.73 0.512847
Target:  5'- cGUgGCCAcGGCcGCGgccaguUCUGCCUUGGUc -3'
miRNA:   3'- -CAgCGGUuCCGaUGC------AGACGGAACCA- -5'
24342 5' -55.9 NC_005264.1 + 83125 0.74 0.455462
Target:  5'- -gCGCCAAGGCcgcggaggcGCGUCUGCCcucaUGGUg -3'
miRNA:   3'- caGCGGUUCCGa--------UGCAGACGGa---ACCA- -5'
24342 5' -55.9 NC_005264.1 + 155577 1.08 0.003206
Target:  5'- cGUCGCCAAGGCUACGUCUGCCUUGGUa -3'
miRNA:   3'- -CAGCGGUUCCGAUGCAGACGGAACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.