miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 59991 0.67 0.759367
Target:  5'- gGCCGcgagcGaGACGGcCGCGUGGcCGCG-GCc -3'
miRNA:   3'- -CGGCa----C-CUGCU-GCGCACCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 32548 0.67 0.759367
Target:  5'- gGCUGUGGAUGugGCugccgcGGuagccgccgcaACGuCGCGCa -3'
miRNA:   3'- -CGGCACCUGCugCGca----CC-----------UGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 158599 0.67 0.759367
Target:  5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3'
miRNA:   3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 80631 0.67 0.768403
Target:  5'- cCCGaGGACGA----UGGACGCGCGg -3'
miRNA:   3'- cGGCaCCUGCUgcgcACCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 80189 0.67 0.776442
Target:  5'- cGCgGUcuugaaaGGAgaGGCGCG-GGACGUGUGUg -3'
miRNA:   3'- -CGgCA-------CCUg-CUGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 157686 0.67 0.777329
Target:  5'- gGCUucGGACGAUGCGgcgcGGcCGCGCa- -3'
miRNA:   3'- -CGGcaCCUGCUGCGCa---CCuGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 129519 0.67 0.785262
Target:  5'- cGCCG-GaGGCGACggaaccacugcggGCGUGGGCuuagGCGuCGCc -3'
miRNA:   3'- -CGGCaC-CUGCUG-------------CGCACCUG----CGC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 59778 0.67 0.786138
Target:  5'- gGCCGUGGcuguccACGGC-CGUGucCGC-CGCg -3'
miRNA:   3'- -CGGCACC------UGCUGcGCACcuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 124161 0.67 0.786138
Target:  5'- uGCUG-GGcaACGugGUGaUGGGCGC-CGCc -3'
miRNA:   3'- -CGGCaCC--UGCugCGC-ACCUGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 57038 0.67 0.789626
Target:  5'- aGCCGUGGgucGCGACcucuacguugguagaGCGUccgucgucaGcGGCGgGCGCa -3'
miRNA:   3'- -CGGCACC---UGCUG---------------CGCA---------C-CUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 159397 0.66 0.793094
Target:  5'- cGCCacGGGCGGCGgaccccugagaaGUGGG-GCGCGCc -3'
miRNA:   3'- -CGGcaCCUGCUGCg-----------CACCUgCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 95444 0.66 0.79482
Target:  5'- cGUCGUGGAauaCGcuacCGCGccGGCGgGCGCa -3'
miRNA:   3'- -CGGCACCU---GCu---GCGCacCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 35512 0.66 0.79482
Target:  5'- aUCGcUGGACG-UGaaaGUGGGCGCG-GCg -3'
miRNA:   3'- cGGC-ACCUGCuGCg--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 23246 0.66 0.79482
Target:  5'- aGCCGUaGACGACGgagcaggucaCGUuGucuauuucGCGCGCGCg -3'
miRNA:   3'- -CGGCAcCUGCUGC----------GCAcC--------UGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 151536 0.66 0.79482
Target:  5'- cUCaUGGGCG--GCGUGGACGCccuacccugGCGCg -3'
miRNA:   3'- cGGcACCUGCugCGCACCUGCG---------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 94593 0.66 0.798256
Target:  5'- gGCCGcccgcggcgcgggcaUGGcuugGCGguGCgGCGUGGACGCGCu- -3'
miRNA:   3'- -CGGC---------------ACC----UGC--UG-CGCACCUGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 120634 0.66 0.803369
Target:  5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3'
miRNA:   3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 58614 0.66 0.803369
Target:  5'- uGUCGaauuccGAUGACcCGUGcGACGCGUGCu -3'
miRNA:   3'- -CGGCac----CUGCUGcGCAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 1607 0.66 0.803369
Target:  5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3'
miRNA:   3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 103136 0.66 0.803369
Target:  5'- aGCCGccGGcGCGGCGCGcGG-CGCaaaGCGUa -3'
miRNA:   3'- -CGGCa-CC-UGCUGCGCaCCuGCG---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.