miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 122638 0.75 0.328966
Target:  5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3'
miRNA:   3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 124161 0.67 0.786138
Target:  5'- uGCUG-GGcaACGugGUGaUGGGCGC-CGCc -3'
miRNA:   3'- -CGGCaCC--UGCugCGC-ACCUGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 124306 0.69 0.644246
Target:  5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3'
miRNA:   3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 127323 0.73 0.447774
Target:  5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3'
miRNA:   3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 129519 0.67 0.785262
Target:  5'- cGCCG-GaGGCGACggaaccacugcggGCGUGGGCuuagGCGuCGCc -3'
miRNA:   3'- -CGGCaC-CUGCUG-------------CGCACCUG----CGC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 131590 0.85 0.08403
Target:  5'- cGCCuagguGUGGAgGgagcggcGCGCGUGGGCGCGCGCg -3'
miRNA:   3'- -CGG-----CACCUgC-------UGCGCACCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 131977 0.68 0.731675
Target:  5'- cGCCGUugccuaccGGGCGGCGCGccgccgccGACGaCGaCGCg -3'
miRNA:   3'- -CGGCA--------CCUGCUGCGCac------CUGC-GC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 132626 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 136776 0.66 0.820038
Target:  5'- aGCCcaGUGaGuccuuuCGGCGCGUGGcCGgGCGg -3'
miRNA:   3'- -CGG--CAC-Cu-----GCUGCGCACCuGCgCGCg -5'
24343 5' -59.7 NC_005264.1 + 138324 0.67 0.740995
Target:  5'- aGuuGUGGucAUGGCGCGUGcGCGacaagGCGCc -3'
miRNA:   3'- -CggCACC--UGCUGCGCACcUGCg----CGCG- -5'
24343 5' -59.7 NC_005264.1 + 139809 0.7 0.615965
Target:  5'- uGCCGUcGGcCGuCGCG-GGACGaaaCGCGUa -3'
miRNA:   3'- -CGGCA-CCuGCuGCGCaCCUGC---GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 140552 0.72 0.501523
Target:  5'- gGCUG-GGAUGGCagaaGGGCGCGCGCg -3'
miRNA:   3'- -CGGCaCCUGCUGcgcaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 149637 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 150494 0.66 0.828143
Target:  5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3'
miRNA:   3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 150986 0.69 0.625714
Target:  5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3'
miRNA:   3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 151536 0.66 0.79482
Target:  5'- cUCaUGGGCG--GCGUGGACGCccuacccugGCGCg -3'
miRNA:   3'- cGGcACCUGCugCGCACCUGCG---------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 151852 0.66 0.828143
Target:  5'- cGCCGcuccgGcGGCGACaCGUGGGgggcgucuuCGCGgGCa -3'
miRNA:   3'- -CGGCa----C-CUGCUGcGCACCU---------GCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 152968 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 154817 0.68 0.684062
Target:  5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3'
miRNA:   3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 154908 1.13 0.00097
Target:  5'- gGCCGUGGACGACGCGUGGACGCGCGCg -3'
miRNA:   3'- -CGGCACCUGCUGCGCACCUGCGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.