miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 39504 0.76 0.287772
Target:  5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3'
miRNA:   3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 39447 0.71 0.510761
Target:  5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3'
miRNA:   3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 38023 0.68 0.731675
Target:  5'- cGCCGUGGGCGccuCG-GUGGugcacgacgguCGCGUGg -3'
miRNA:   3'- -CGGCACCUGCu--GCgCACCu----------GCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 37659 0.7 0.596504
Target:  5'- aUCGUGcacGCGAUGCGcgacGGGCGCGCGg -3'
miRNA:   3'- cGGCACc--UGCUGCGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 37241 0.68 0.703279
Target:  5'- gGCCccUGGGgGGCGCaucaccGUGGACGagGCGCu -3'
miRNA:   3'- -CGGc-ACCUgCUGCG------CACCUGCg-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 35791 0.68 0.684062
Target:  5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3'
miRNA:   3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 35512 0.66 0.79482
Target:  5'- aUCGcUGGACG-UGaaaGUGGGCGCG-GCg -3'
miRNA:   3'- cGGC-ACCUGCuGCg--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 33941 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 32548 0.67 0.759367
Target:  5'- gGCUGUGGAUGugGCugccgcGGuagccgccgcaACGuCGCGCa -3'
miRNA:   3'- -CGGCACCUGCugCGca----CC-----------UGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 31959 0.69 0.625714
Target:  5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3'
miRNA:   3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 31467 0.66 0.828143
Target:  5'- cGUCGccGAUGG-GCGUGGAUGgUGCGCc -3'
miRNA:   3'- -CGGCacCUGCUgCGCACCUGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 30610 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 29274 0.66 0.828143
Target:  5'- aUUGuUGGACugUGCGcGGGCGCGUGCc -3'
miRNA:   3'- cGGC-ACCUGcuGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 25958 0.71 0.557917
Target:  5'- ----aGGACGGCGC--GGACGUGUGCa -3'
miRNA:   3'- cggcaCCUGCUGCGcaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 23246 0.66 0.79482
Target:  5'- aGCCGUaGACGACGgagcaggucaCGUuGucuauuucGCGCGCGCg -3'
miRNA:   3'- -CGGCAcCUGCUGC----------GCAcC--------UGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 22180 0.68 0.703279
Target:  5'- gGCCGUGGuuGGuuCGUauccaucuGUGG-CGUGCGCg -3'
miRNA:   3'- -CGGCACCugCU--GCG--------CACCuGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 19428 0.7 0.606226
Target:  5'- cGCCGgGuGugGcCGCG-GGGCGCGgGUg -3'
miRNA:   3'- -CGGCaC-CugCuGCGCaCCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 17334 0.68 0.687919
Target:  5'- uGCCGUGGACGucugcagugccuucCGCGgcagcugGcGGCG-GCGCg -3'
miRNA:   3'- -CGGCACCUGCu-------------GCGCa------C-CUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 16562 0.77 0.263626
Target:  5'- cGCgGUGGGCGGCGcCG-GGGCGgCgGCGCa -3'
miRNA:   3'- -CGgCACCUGCUGC-GCaCCUGC-G-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 15430 0.68 0.684062
Target:  5'- cUCGUGGcGCGAUgggagcucaugaGUGUGGACaaGCGCg -3'
miRNA:   3'- cGGCACC-UGCUG------------CGCACCUGcgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.