Results 101 - 111 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 138324 | 0.67 | 0.740995 |
Target: 5'- aGuuGUGGucAUGGCGCGUGcGCGacaagGCGCc -3' miRNA: 3'- -CggCACC--UGCUGCGCACcUGCg----CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 53567 | 0.67 | 0.740995 |
Target: 5'- aGCuCGcGGuACGACGCGcccGACGCGUGg -3' miRNA: 3'- -CG-GCaCC-UGCUGCGCac-CUGCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 13599 | 0.67 | 0.750228 |
Target: 5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3' miRNA: 3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 53355 | 0.67 | 0.750228 |
Target: 5'- aGCCuaaGGACGGCGUGgcaagcGuGAUGCGCGa -3' miRNA: 3'- -CGGca-CCUGCUGCGCa-----C-CUGCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 39572 | 0.67 | 0.759367 |
Target: 5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3' miRNA: 3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 80631 | 0.67 | 0.768403 |
Target: 5'- cCCGaGGACGA----UGGACGCGCGg -3' miRNA: 3'- cGGCaCCUGCUgcgcACCUGCGCGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 80189 | 0.67 | 0.776442 |
Target: 5'- cGCgGUcuugaaaGGAgaGGCGCG-GGACGUGUGUg -3' miRNA: 3'- -CGgCA-------CCUg-CUGCGCaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 157686 | 0.67 | 0.777329 |
Target: 5'- gGCUucGGACGAUGCGgcgcGGcCGCGCa- -3' miRNA: 3'- -CGGcaCCUGCUGCGCa---CCuGCGCGcg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 129519 | 0.67 | 0.785262 |
Target: 5'- cGCCG-GaGGCGACggaaccacugcggGCGUGGGCuuagGCGuCGCc -3' miRNA: 3'- -CGGCaC-CUGCUG-------------CGCACCUG----CGC-GCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 124161 | 0.67 | 0.786138 |
Target: 5'- uGCUG-GGcaACGugGUGaUGGGCGC-CGCc -3' miRNA: 3'- -CGGCaCC--UGCugCGC-ACCUGCGcGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 161441 | 0.66 | 0.828143 |
Target: 5'- gGCCaggGGuCGuACGgGaaUGcGACGCGCGCa -3' miRNA: 3'- -CGGca-CCuGC-UGCgC--AC-CUGCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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