miRNA display CGI


Results 81 - 100 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 15430 0.68 0.684062
Target:  5'- cUCGUGGcGCGAUgggagcucaugaGUGUGGACaaGCGCg -3'
miRNA:   3'- cGGCACC-UGCUG------------CGCACCUGcgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 154817 0.68 0.684062
Target:  5'- cGCgGUGG-CGcCGuCGUGG-CGgGCGCc -3'
miRNA:   3'- -CGgCACCuGCuGC-GCACCuGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 59991 0.67 0.759367
Target:  5'- gGCCGcgagcGaGACGGcCGCGUGGcCGCG-GCc -3'
miRNA:   3'- -CGGCa----C-CUGCU-GCGCACCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 158599 0.67 0.759367
Target:  5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3'
miRNA:   3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 59778 0.67 0.786138
Target:  5'- gGCCGUGGcuguccACGGC-CGUGucCGC-CGCg -3'
miRNA:   3'- -CGGCACC------UGCUGcGCACcuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 57038 0.67 0.789626
Target:  5'- aGCCGUGGgucGCGACcucuacguugguagaGCGUccgucgucaGcGGCGgGCGCa -3'
miRNA:   3'- -CGGCACC---UGCUG---------------CGCA---------C-CUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 35512 0.66 0.79482
Target:  5'- aUCGcUGGACG-UGaaaGUGGGCGCG-GCg -3'
miRNA:   3'- cGGC-ACCUGCuGCg--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 120634 0.66 0.803369
Target:  5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3'
miRNA:   3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 111583 0.66 0.811778
Target:  5'- cGCCGUGGuguuCuCGUGGugGCugcacaacGCGCu -3'
miRNA:   3'- -CGGCACCugcuGcGCACCugCG--------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 136776 0.66 0.820038
Target:  5'- aGCCcaGUGaGuccuuuCGGCGCGUGGcCGgGCGg -3'
miRNA:   3'- -CGG--CAC-Cu-----GCUGCGCACCuGCgCGCg -5'
24343 5' -59.7 NC_005264.1 + 32548 0.67 0.759367
Target:  5'- gGCUGUGGAUGugGCugccgcGGuagccgccgcaACGuCGCGCa -3'
miRNA:   3'- -CGGCACCUGCugCGca----CC-----------UGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 91290 0.67 0.753895
Target:  5'- cGCCGUucaacucugucaccaGGGCGAUGCccGUaccGGAgGCGCuGCg -3'
miRNA:   3'- -CGGCA---------------CCUGCUGCG--CA---CCUgCGCG-CG- -5'
24343 5' -59.7 NC_005264.1 + 15369 0.68 0.684062
Target:  5'- cCCGUucgGGAgCGACGCGaUGGugGaGUGCc -3'
miRNA:   3'- cGGCA---CCU-GCUGCGC-ACCugCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 17334 0.68 0.687919
Target:  5'- uGCCGUGGACGucugcagugccuucCGCGgcagcugGcGGCG-GCGCg -3'
miRNA:   3'- -CGGCACCUGCu-------------GCGCa------C-CUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 86154 0.68 0.703279
Target:  5'- aCgGUGGGCGACaGCcUGGugGC-CGUg -3'
miRNA:   3'- cGgCACCUGCUG-CGcACCugCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 131977 0.68 0.731675
Target:  5'- cGCCGUugccuaccGGGCGGCGCGccgccgccGACGaCGaCGCg -3'
miRNA:   3'- -CGGCA--------CCUGCUGCGCac------CUGC-GC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 93823 0.68 0.731675
Target:  5'- cGCCGUGGcacaguACGAUgGCGacagGGcCGCGgGCc -3'
miRNA:   3'- -CGGCACC------UGCUG-CGCa---CCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 87429 0.67 0.740995
Target:  5'- cGCCGUacacugcccGCGGcCGCGcagacGGugGCGCGCa -3'
miRNA:   3'- -CGGCAcc-------UGCU-GCGCa----CCugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 66848 0.67 0.740995
Target:  5'- cGCCGUcGccCGACGCGaaauaGAuCGCGCGCg -3'
miRNA:   3'- -CGGCA-CcuGCUGCGCac---CU-GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 132626 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.