Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24343 | 5' | -59.7 | NC_005264.1 | + | 248 | 0.73 | 0.439126 |
Target: 5'- uUUGUGcGGCGGCGC-UGGACGCG-GCa -3' miRNA: 3'- cGGCAC-CUGCUGCGcACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 1607 | 0.66 | 0.803369 |
Target: 5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3' miRNA: 3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 3296 | 0.7 | 0.615965 |
Target: 5'- aGUCGUGaGCucGCGCG-GGAuCGCGCGCc -3' miRNA: 3'- -CGGCACcUGc-UGCGCaCCU-GCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 3606 | 0.82 | 0.11682 |
Target: 5'- gGCCGUGGugGACG-GUGGGCGCuGUGg -3' miRNA: 3'- -CGGCACCugCUGCgCACCUGCG-CGCg -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 3611 | 0.75 | 0.328966 |
Target: 5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3' miRNA: 3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 5279 | 0.69 | 0.644246 |
Target: 5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3' miRNA: 3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 8296 | 0.73 | 0.447774 |
Target: 5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3' miRNA: 3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 12951 | 0.68 | 0.693694 |
Target: 5'- cGCCGUugccuaccGGGCGGCGCGcgccgccGACGaCGaCGCg -3' miRNA: 3'- -CGGCA--------CCUGCUGCGCac-----CUGC-GC-GCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 13599 | 0.67 | 0.750228 |
Target: 5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3' miRNA: 3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 14038 | 0.7 | 0.606226 |
Target: 5'- aGUCGUccGGACGugGCGgggccgGGugGgaaCGUGCa -3' miRNA: 3'- -CGGCA--CCUGCugCGCa-----CCugC---GCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 15369 | 0.68 | 0.684062 |
Target: 5'- cCCGUucgGGAgCGACGCGaUGGugGaGUGCc -3' miRNA: 3'- cGGCA---CCU-GCUGCGC-ACCugCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 15430 | 0.68 | 0.684062 |
Target: 5'- cUCGUGGcGCGAUgggagcucaugaGUGUGGACaaGCGCg -3' miRNA: 3'- cGGCACC-UGCUG------------CGCACCUGcgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 16562 | 0.77 | 0.263626 |
Target: 5'- cGCgGUGGGCGGCGcCG-GGGCGgCgGCGCa -3' miRNA: 3'- -CGgCACCUGCUGC-GCaCCUGC-G-CGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 17334 | 0.68 | 0.687919 |
Target: 5'- uGCCGUGGACGucugcagugccuucCGCGgcagcugGcGGCG-GCGCg -3' miRNA: 3'- -CGGCACCUGCu-------------GCGCa------C-CUGCgCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 19428 | 0.7 | 0.606226 |
Target: 5'- cGCCGgGuGugGcCGCG-GGGCGCGgGUg -3' miRNA: 3'- -CGGCaC-CugCuGCGCaCCUGCGCgCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 22180 | 0.68 | 0.703279 |
Target: 5'- gGCCGUGGuuGGuuCGUauccaucuGUGG-CGUGCGCg -3' miRNA: 3'- -CGGCACCugCU--GCG--------CACCuGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 23246 | 0.66 | 0.79482 |
Target: 5'- aGCCGUaGACGACGgagcaggucaCGUuGucuauuucGCGCGCGCg -3' miRNA: 3'- -CGGCAcCUGCUGC----------GCAcC--------UGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 25958 | 0.71 | 0.557917 |
Target: 5'- ----aGGACGGCGC--GGACGUGUGCa -3' miRNA: 3'- cggcaCCUGCUGCGcaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 29274 | 0.66 | 0.828143 |
Target: 5'- aUUGuUGGACugUGCGcGGGCGCGUGCc -3' miRNA: 3'- cGGC-ACCUGcuGCGCaCCUGCGCGCG- -5' |
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24343 | 5' | -59.7 | NC_005264.1 | + | 30610 | 0.68 | 0.722277 |
Target: 5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3' miRNA: 3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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