miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 248 0.73 0.439126
Target:  5'- uUUGUGcGGCGGCGC-UGGACGCG-GCa -3'
miRNA:   3'- cGGCAC-CUGCUGCGcACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 1607 0.66 0.803369
Target:  5'- gGCCaG-GGAUacggGACGCcgGUGGGCGCG-GCu -3'
miRNA:   3'- -CGG-CaCCUG----CUGCG--CACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 3296 0.7 0.615965
Target:  5'- aGUCGUGaGCucGCGCG-GGAuCGCGCGCc -3'
miRNA:   3'- -CGGCACcUGc-UGCGCaCCU-GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 3606 0.82 0.11682
Target:  5'- gGCCGUGGugGACG-GUGGGCGCuGUGg -3'
miRNA:   3'- -CGGCACCugCUGCgCACCUGCG-CGCg -5'
24343 5' -59.7 NC_005264.1 + 3611 0.75 0.328966
Target:  5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3'
miRNA:   3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 5279 0.69 0.644246
Target:  5'- gGCCGgacggcgGGGCGGCGgcugaccCGUGGG-GCGgGCg -3'
miRNA:   3'- -CGGCa------CCUGCUGC-------GCACCUgCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 8296 0.73 0.447774
Target:  5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3'
miRNA:   3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 12951 0.68 0.693694
Target:  5'- cGCCGUugccuaccGGGCGGCGCGcgccgccGACGaCGaCGCg -3'
miRNA:   3'- -CGGCA--------CCUGCUGCGCac-----CUGC-GC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 13599 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 14038 0.7 0.606226
Target:  5'- aGUCGUccGGACGugGCGgggccgGGugGgaaCGUGCa -3'
miRNA:   3'- -CGGCA--CCUGCugCGCa-----CCugC---GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 15369 0.68 0.684062
Target:  5'- cCCGUucgGGAgCGACGCGaUGGugGaGUGCc -3'
miRNA:   3'- cGGCA---CCU-GCUGCGC-ACCugCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 15430 0.68 0.684062
Target:  5'- cUCGUGGcGCGAUgggagcucaugaGUGUGGACaaGCGCg -3'
miRNA:   3'- cGGCACC-UGCUG------------CGCACCUGcgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 16562 0.77 0.263626
Target:  5'- cGCgGUGGGCGGCGcCG-GGGCGgCgGCGCa -3'
miRNA:   3'- -CGgCACCUGCUGC-GCaCCUGC-G-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 17334 0.68 0.687919
Target:  5'- uGCCGUGGACGucugcagugccuucCGCGgcagcugGcGGCG-GCGCg -3'
miRNA:   3'- -CGGCACCUGCu-------------GCGCa------C-CUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 19428 0.7 0.606226
Target:  5'- cGCCGgGuGugGcCGCG-GGGCGCGgGUg -3'
miRNA:   3'- -CGGCaC-CugCuGCGCaCCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 22180 0.68 0.703279
Target:  5'- gGCCGUGGuuGGuuCGUauccaucuGUGG-CGUGCGCg -3'
miRNA:   3'- -CGGCACCugCU--GCG--------CACCuGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 23246 0.66 0.79482
Target:  5'- aGCCGUaGACGACGgagcaggucaCGUuGucuauuucGCGCGCGCg -3'
miRNA:   3'- -CGGCAcCUGCUGC----------GCAcC--------UGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 25958 0.71 0.557917
Target:  5'- ----aGGACGGCGC--GGACGUGUGCa -3'
miRNA:   3'- cggcaCCUGCUGCGcaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 29274 0.66 0.828143
Target:  5'- aUUGuUGGACugUGCGcGGGCGCGUGCc -3'
miRNA:   3'- cGGC-ACCUGcuGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 30610 0.68 0.722277
Target:  5'- cCCG-GcGACGGCgGCGgcgacGGAucCGCGCGCa -3'
miRNA:   3'- cGGCaC-CUGCUG-CGCa----CCU--GCGCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.