miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 95357 0.69 0.632542
Target:  5'- gGCCGacGGGCGGCGCGUGccgccaaacugccaGGCGUGgGa -3'
miRNA:   3'- -CGGCa-CCUGCUGCGCAC--------------CUGCGCgCg -5'
24343 5' -59.7 NC_005264.1 + 45756 0.7 0.586807
Target:  5'- uGCCauaGGACcccuGCGCG-GGGCGCGCGg -3'
miRNA:   3'- -CGGca-CCUGc---UGCGCaCCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 52205 0.7 0.596504
Target:  5'- gGCCGUGG--GGCGC--GGugGCGCGa -3'
miRNA:   3'- -CGGCACCugCUGCGcaCCugCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 152968 0.7 0.596504
Target:  5'- gGCCGUGG-CG-CGcCG-GGAC-CGCGCc -3'
miRNA:   3'- -CGGCACCuGCuGC-GCaCCUGcGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 14038 0.7 0.606226
Target:  5'- aGUCGUccGGACGugGCGgggccgGGugGgaaCGUGCa -3'
miRNA:   3'- -CGGCA--CCUGCugCGCa-----CCugC---GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 19428 0.7 0.606226
Target:  5'- cGCCGgGuGugGcCGCG-GGGCGCGgGUg -3'
miRNA:   3'- -CGGCaC-CugCuGCGCaCCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 49596 0.7 0.606226
Target:  5'- cGCCGgcgaccaGGACGACGgG-GGGCGCuCGg -3'
miRNA:   3'- -CGGCa------CCUGCUGCgCaCCUGCGcGCg -5'
24343 5' -59.7 NC_005264.1 + 3296 0.7 0.615965
Target:  5'- aGUCGUGaGCucGCGCG-GGAuCGCGCGCc -3'
miRNA:   3'- -CGGCACcUGc-UGCGCaCCU-GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 150986 0.69 0.625714
Target:  5'- cGCgaGUGGcgGCGAcgggcCGCGUGuccGAUGCGCGCu -3'
miRNA:   3'- -CGg-CACC--UGCU-----GCGCAC---CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 114282 0.7 0.577139
Target:  5'- uGuuGUgcGGACGACgaagGCGacggGGGCGCGCGg -3'
miRNA:   3'- -CggCA--CCUGCUG----CGCa---CCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 25958 0.71 0.557917
Target:  5'- ----aGGACGGCGC--GGACGUGUGCa -3'
miRNA:   3'- cggcaCCUGCUGCGcaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 158474 0.71 0.510761
Target:  5'- uGCCG-GGGCGGuggaaagcaUGC-UGcGACGCGCGCu -3'
miRNA:   3'- -CGGCaCCUGCU---------GCGcAC-CUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 16562 0.77 0.263626
Target:  5'- cGCgGUGGGCGGCGcCG-GGGCGgCgGCGCa -3'
miRNA:   3'- -CGgCACCUGCUGC-GCaCCUGC-G-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 158531 0.76 0.287772
Target:  5'- cGCUGUGGugGACGCcagGGACGauaaggaCGUGCu -3'
miRNA:   3'- -CGGCACCugCUGCGca-CCUGC-------GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 122638 0.75 0.328966
Target:  5'- cGCCGcGGGgGGcCGCGaGGGCGgGCGCg -3'
miRNA:   3'- -CGGCaCCUgCU-GCGCaCCUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 65734 0.73 0.40552
Target:  5'- uGCUG-GGACGAUGUGUGGucCGCcgucggccgGCGCa -3'
miRNA:   3'- -CGGCaCCUGCUGCGCACCu-GCG---------CGCG- -5'
24343 5' -59.7 NC_005264.1 + 248 0.73 0.439126
Target:  5'- uUUGUGcGGCGGCGC-UGGACGCG-GCa -3'
miRNA:   3'- cGGCAC-CUGCUGCGcACCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 40248 0.73 0.439126
Target:  5'- uGUCGUGGACGugcgguaccccaACGCgGUGcGGCGCuGCGUg -3'
miRNA:   3'- -CGGCACCUGC------------UGCG-CAC-CUGCG-CGCG- -5'
24343 5' -59.7 NC_005264.1 + 127323 0.73 0.447774
Target:  5'- cCCGUGGGCGACGgG-GGcaccuGCGC-CGCg -3'
miRNA:   3'- cGGCACCUGCUGCgCaCC-----UGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 42518 0.72 0.500603
Target:  5'- aCUGUGGccugaugUGugGCGUGGGCGCagcuuccGCGCg -3'
miRNA:   3'- cGGCACCu------GCugCGCACCUGCG-------CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.