miRNA display CGI


Results 21 - 40 of 111 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24343 5' -59.7 NC_005264.1 + 159397 0.66 0.793094
Target:  5'- cGCCacGGGCGGCGgaccccugagaaGUGGG-GCGCGCc -3'
miRNA:   3'- -CGGcaCCUGCUGCg-----------CACCUgCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 57038 0.67 0.789626
Target:  5'- aGCCGUGGgucGCGACcucuacguugguagaGCGUccgucgucaGcGGCGgGCGCa -3'
miRNA:   3'- -CGGCACC---UGCUG---------------CGCA---------C-CUGCgCGCG- -5'
24343 5' -59.7 NC_005264.1 + 59778 0.67 0.786138
Target:  5'- gGCCGUGGcuguccACGGC-CGUGucCGC-CGCg -3'
miRNA:   3'- -CGGCACC------UGCUGcGCACcuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 124161 0.67 0.786138
Target:  5'- uGCUG-GGcaACGugGUGaUGGGCGC-CGCc -3'
miRNA:   3'- -CGGCaCC--UGCugCGC-ACCUGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 129519 0.67 0.785262
Target:  5'- cGCCG-GaGGCGACggaaccacugcggGCGUGGGCuuagGCGuCGCc -3'
miRNA:   3'- -CGGCaC-CUGCUG-------------CGCACCUG----CGC-GCG- -5'
24343 5' -59.7 NC_005264.1 + 157686 0.67 0.777329
Target:  5'- gGCUucGGACGAUGCGgcgcGGcCGCGCa- -3'
miRNA:   3'- -CGGcaCCUGCUGCGCa---CCuGCGCGcg -5'
24343 5' -59.7 NC_005264.1 + 80189 0.67 0.776442
Target:  5'- cGCgGUcuugaaaGGAgaGGCGCG-GGACGUGUGUg -3'
miRNA:   3'- -CGgCA-------CCUg-CUGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 80631 0.67 0.768403
Target:  5'- cCCGaGGACGA----UGGACGCGCGg -3'
miRNA:   3'- cGGCaCCUGCUgcgcACCUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 32548 0.67 0.759367
Target:  5'- gGCUGUGGAUGugGCugccgcGGuagccgccgcaACGuCGCGCa -3'
miRNA:   3'- -CGGCACCUGCugCGca----CC-----------UGC-GCGCG- -5'
24343 5' -59.7 NC_005264.1 + 59991 0.67 0.759367
Target:  5'- gGCCGcgagcGaGACGGcCGCGUGGcCGCG-GCc -3'
miRNA:   3'- -CGGCa----C-CUGCU-GCGCACCuGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 158599 0.67 0.759367
Target:  5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3'
miRNA:   3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 39572 0.67 0.759367
Target:  5'- aGCCG-GGACuGAucuaccuuCGCGUGG-CGC-CGCc -3'
miRNA:   3'- -CGGCaCCUG-CU--------GCGCACCuGCGcGCG- -5'
24343 5' -59.7 NC_005264.1 + 91290 0.67 0.753895
Target:  5'- cGCCGUucaacucugucaccaGGGCGAUGCccGUaccGGAgGCGCuGCg -3'
miRNA:   3'- -CGGCA---------------CCUGCUGCG--CA---CCUgCGCG-CG- -5'
24343 5' -59.7 NC_005264.1 + 132626 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 13599 0.67 0.750228
Target:  5'- -aCGggaccGGCGAuCGCGgucgGGACGCGgGCa -3'
miRNA:   3'- cgGCac---CUGCU-GCGCa---CCUGCGCgCG- -5'
24343 5' -59.7 NC_005264.1 + 53355 0.67 0.750228
Target:  5'- aGCCuaaGGACGGCGUGgcaagcGuGAUGCGCGa -3'
miRNA:   3'- -CGGca-CCUGCUGCGCa-----C-CUGCGCGCg -5'
24343 5' -59.7 NC_005264.1 + 87429 0.67 0.740995
Target:  5'- cGCCGUacacugcccGCGGcCGCGcagacGGugGCGCGCa -3'
miRNA:   3'- -CGGCAcc-------UGCU-GCGCa----CCugCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 94414 0.67 0.740995
Target:  5'- cGgCGcGGACugcgcgaucgcuGACGUG-GGAUGCGCGUa -3'
miRNA:   3'- -CgGCaCCUG------------CUGCGCaCCUGCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 66848 0.67 0.740995
Target:  5'- cGCCGUcGccCGACGCGaaauaGAuCGCGCGCg -3'
miRNA:   3'- -CGGCA-CcuGCUGCGCac---CU-GCGCGCG- -5'
24343 5' -59.7 NC_005264.1 + 53567 0.67 0.740995
Target:  5'- aGCuCGcGGuACGACGCGcccGACGCGUGg -3'
miRNA:   3'- -CG-GCaCC-UGCUGCGCac-CUGCGCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.