miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24344 3' -59.6 NC_005264.1 + 3823 0.66 0.787366
Target:  5'- cGGGCCC-GGGCGgGGccgcaGGAGGaaaUACg -3'
miRNA:   3'- -UCCGGGaCCUGCgCCa----CCUCUg--AUGa -5'
24344 3' -59.6 NC_005264.1 + 122849 0.66 0.787366
Target:  5'- cGGGCCC-GGGCGgGGccgcaGGAGGaaaUACg -3'
miRNA:   3'- -UCCGGGaCCUGCgCCa----CCUCUg--AUGa -5'
24344 3' -59.6 NC_005264.1 + 37628 0.66 0.769253
Target:  5'- uGGCCgCUcuacacaaGGACGUGGcGGAGAUgaagGCUu -3'
miRNA:   3'- uCCGG-GA--------CCUGCGCCaCCUCUGa---UGA- -5'
24344 3' -59.6 NC_005264.1 + 32541 0.66 0.769253
Target:  5'- cGGCCCUGGcUGUGGaUGu-GGCUGCc -3'
miRNA:   3'- uCCGGGACCuGCGCC-ACcuCUGAUGa -5'
24344 3' -59.6 NC_005264.1 + 4171 0.66 0.741235
Target:  5'- uGGCaCCUGGGguaGGUGGGGGgUGCa -3'
miRNA:   3'- uCCG-GGACCUgcgCCACCUCUgAUGa -5'
24344 3' -59.6 NC_005264.1 + 162231 0.67 0.731703
Target:  5'- cGGGCCggcgGGGgGgGG-GGGGGCUACg -3'
miRNA:   3'- -UCCGGga--CCUgCgCCaCCUCUGAUGa -5'
24344 3' -59.6 NC_005264.1 + 43204 0.67 0.731703
Target:  5'- cGGGCCggcgGGGgGgGG-GGGGGCUACg -3'
miRNA:   3'- -UCCGGga--CCUgCgCCaCCUCUGAUGa -5'
24344 3' -59.6 NC_005264.1 + 153241 0.67 0.731703
Target:  5'- cGGaGCCUUcGGCGCauGGggGGGGACUACUg -3'
miRNA:   3'- -UC-CGGGAcCUGCG--CCa-CCUCUGAUGA- -5'
24344 3' -59.6 NC_005264.1 + 156019 0.67 0.731703
Target:  5'- -cGCCC-GGcgacgcuuGCGCGGUGGAcgccucauGGCUGCUa -3'
miRNA:   3'- ucCGGGaCC--------UGCGCCACCU--------CUGAUGA- -5'
24344 3' -59.6 NC_005264.1 + 65459 0.68 0.643239
Target:  5'- cGGGCCCUGGGgGCuuuUGGGGgauacgccGCUGCUc -3'
miRNA:   3'- -UCCGGGACCUgCGcc-ACCUC--------UGAUGA- -5'
24344 3' -59.6 NC_005264.1 + 47586 0.69 0.613314
Target:  5'- uGGCUCgcggGGACGCGuugggGGAGACUcGCg -3'
miRNA:   3'- uCCGGGa---CCUGCGCca---CCUCUGA-UGa -5'
24344 3' -59.6 NC_005264.1 + 136718 0.69 0.613314
Target:  5'- uGGCCCUGGAgaCGCGGaaGAGGucGCUa -3'
miRNA:   3'- uCCGGGACCU--GCGCCacCUCUgaUGA- -5'
24344 3' -59.6 NC_005264.1 + 52203 0.69 0.613314
Target:  5'- aGGGCCgUgGGGCGCGGUGGcGcgaGCUGgUa -3'
miRNA:   3'- -UCCGGgA-CCUGCGCCACCuC---UGAUgA- -5'
24344 3' -59.6 NC_005264.1 + 131990 0.69 0.612318
Target:  5'- cAGGCC--GGugGCGGUGGgccgaccggcgccAGAUUACg -3'
miRNA:   3'- -UCCGGgaCCugCGCCACC-------------UCUGAUGa -5'
24344 3' -59.6 NC_005264.1 + 3604 0.71 0.468764
Target:  5'- uAGGCCgUGGugGaCGGUGGGcGCUGu- -3'
miRNA:   3'- -UCCGGgACCugC-GCCACCUcUGAUga -5'
24344 3' -59.6 NC_005264.1 + 55170 0.71 0.459696
Target:  5'- cGGCCuCUGGGCGCGGcUGaAGGCgGCg -3'
miRNA:   3'- uCCGG-GACCUGCGCC-ACcUCUGaUGa -5'
24344 3' -59.6 NC_005264.1 + 76298 0.74 0.328928
Target:  5'- ---aUCUGGGCGCGG-GGGGGCUGCUg -3'
miRNA:   3'- uccgGGACCUGCGCCaCCUCUGAUGA- -5'
24344 3' -59.6 NC_005264.1 + 152689 0.96 0.011667
Target:  5'- gAGG-CCUGGACGCGGUGGAGACUACUa -3'
miRNA:   3'- -UCCgGGACCUGCGCCACCUCUGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.