Results 1 - 18 of 18 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 122849 | 0.66 | 0.787366 |
Target: 5'- cGGGCCC-GGGCGgGGccgcaGGAGGaaaUACg -3' miRNA: 3'- -UCCGGGaCCUGCgCCa----CCUCUg--AUGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 3823 | 0.66 | 0.787366 |
Target: 5'- cGGGCCC-GGGCGgGGccgcaGGAGGaaaUACg -3' miRNA: 3'- -UCCGGGaCCUGCgCCa----CCUCUg--AUGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 32541 | 0.66 | 0.769253 |
Target: 5'- cGGCCCUGGcUGUGGaUGu-GGCUGCc -3' miRNA: 3'- uCCGGGACCuGCGCC-ACcuCUGAUGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 37628 | 0.66 | 0.769253 |
Target: 5'- uGGCCgCUcuacacaaGGACGUGGcGGAGAUgaagGCUu -3' miRNA: 3'- uCCGG-GA--------CCUGCGCCaCCUCUGa---UGA- -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 4171 | 0.66 | 0.741235 |
Target: 5'- uGGCaCCUGGGguaGGUGGGGGgUGCa -3' miRNA: 3'- uCCG-GGACCUgcgCCACCUCUgAUGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 162231 | 0.67 | 0.731703 |
Target: 5'- cGGGCCggcgGGGgGgGG-GGGGGCUACg -3' miRNA: 3'- -UCCGGga--CCUgCgCCaCCUCUGAUGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 156019 | 0.67 | 0.731703 |
Target: 5'- -cGCCC-GGcgacgcuuGCGCGGUGGAcgccucauGGCUGCUa -3' miRNA: 3'- ucCGGGaCC--------UGCGCCACCU--------CUGAUGA- -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 153241 | 0.67 | 0.731703 |
Target: 5'- cGGaGCCUUcGGCGCauGGggGGGGACUACUg -3' miRNA: 3'- -UC-CGGGAcCUGCG--CCa-CCUCUGAUGA- -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 43204 | 0.67 | 0.731703 |
Target: 5'- cGGGCCggcgGGGgGgGG-GGGGGCUACg -3' miRNA: 3'- -UCCGGga--CCUgCgCCaCCUCUGAUGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 65459 | 0.68 | 0.643239 |
Target: 5'- cGGGCCCUGGGgGCuuuUGGGGgauacgccGCUGCUc -3' miRNA: 3'- -UCCGGGACCUgCGcc-ACCUC--------UGAUGA- -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 136718 | 0.69 | 0.613314 |
Target: 5'- uGGCCCUGGAgaCGCGGaaGAGGucGCUa -3' miRNA: 3'- uCCGGGACCU--GCGCCacCUCUgaUGA- -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 52203 | 0.69 | 0.613314 |
Target: 5'- aGGGCCgUgGGGCGCGGUGGcGcgaGCUGgUa -3' miRNA: 3'- -UCCGGgA-CCUGCGCCACCuC---UGAUgA- -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 47586 | 0.69 | 0.613314 |
Target: 5'- uGGCUCgcggGGACGCGuugggGGAGACUcGCg -3' miRNA: 3'- uCCGGGa---CCUGCGCca---CCUCUGA-UGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 131990 | 0.69 | 0.612318 |
Target: 5'- cAGGCC--GGugGCGGUGGgccgaccggcgccAGAUUACg -3' miRNA: 3'- -UCCGGgaCCugCGCCACC-------------UCUGAUGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 3604 | 0.71 | 0.468764 |
Target: 5'- uAGGCCgUGGugGaCGGUGGGcGCUGu- -3' miRNA: 3'- -UCCGGgACCugC-GCCACCUcUGAUga -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 55170 | 0.71 | 0.459696 |
Target: 5'- cGGCCuCUGGGCGCGGcUGaAGGCgGCg -3' miRNA: 3'- uCCGG-GACCUGCGCC-ACcUCUGaUGa -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 76298 | 0.74 | 0.328928 |
Target: 5'- ---aUCUGGGCGCGG-GGGGGCUGCUg -3' miRNA: 3'- uccgGGACCUGCGCCaCCUCUGAUGA- -5' |
|||||||
24344 | 3' | -59.6 | NC_005264.1 | + | 152689 | 0.96 | 0.011667 |
Target: 5'- gAGG-CCUGGACGCGGUGGAGACUACUa -3' miRNA: 3'- -UCCgGGACCUGCGCCACCUCUGAUGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home