miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24344 5' -54.7 NC_005264.1 + 34129 0.66 0.964632
Target:  5'- ----cUGCCU-CugGUgACGGGCGCGu -3'
miRNA:   3'- ccucaACGGAgGugCAgUGCCUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 119920 0.66 0.957689
Target:  5'- uGGGUguacgGCC-CCGUGUCGCGGGC-CGc -3'
miRNA:   3'- cCUCAa----CGGaGGUGCAGUGCCUGuGC- -5'
24344 5' -54.7 NC_005264.1 + 38848 0.66 0.957689
Target:  5'- uGAGcgUGCCU--ACGUCGCGGAgcuccuCGCGg -3'
miRNA:   3'- cCUCa-ACGGAggUGCAGUGCCU------GUGC- -5'
24344 5' -54.7 NC_005264.1 + 66521 0.66 0.95389
Target:  5'- cGAGcgUGCCcugacgacgaCCGCGUUGCGGGCGuCGg -3'
miRNA:   3'- cCUCa-ACGGa---------GGUGCAGUGCCUGU-GC- -5'
24344 5' -54.7 NC_005264.1 + 157632 0.66 0.95389
Target:  5'- aGAGcUUcGCCUcgCCGCGgCGCGaGACACGa -3'
miRNA:   3'- cCUC-AA-CGGA--GGUGCaGUGC-CUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 127079 0.66 0.95389
Target:  5'- -----cGCCUcuucacCCACGUCGCGGcCGCa -3'
miRNA:   3'- ccucaaCGGA------GGUGCAGUGCCuGUGc -5'
24344 5' -54.7 NC_005264.1 + 64540 0.66 0.95389
Target:  5'- cGGAGgggGgUUCCGCGauaACGGACAUc -3'
miRNA:   3'- -CCUCaa-CgGAGGUGCag-UGCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 153407 0.66 0.963977
Target:  5'- aGGAGUUcuuCCUCCACGUguacucucgcuaAUGGGgGCGg -3'
miRNA:   3'- -CCUCAAc--GGAGGUGCAg-----------UGCCUgUGC- -5'
24344 5' -54.7 NC_005264.1 + 152225 0.66 0.953498
Target:  5'- uGGGGcacuuaaUGCCUCgCGCGauauggaUCGCGGuCGCGg -3'
miRNA:   3'- -CCUCa------ACGGAG-GUGC-------AGUGCCuGUGC- -5'
24344 5' -54.7 NC_005264.1 + 34380 0.66 0.963977
Target:  5'- aGGAGUUcuuCCUCCACGUguacucucgcuaAUGGGgGCGg -3'
miRNA:   3'- -CCUCAAc--GGAGGUGCAg-----------UGCCUgUGC- -5'
24344 5' -54.7 NC_005264.1 + 38605 0.66 0.95389
Target:  5'- aGAGcUUcGCCUcgCCGCGgCGCGaGACACGa -3'
miRNA:   3'- cCUC-AA-CGGA--GGUGCaGUGC-CUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 59752 0.66 0.961268
Target:  5'- uGGGGcgGCggCUGCGaCGCGGACGCu -3'
miRNA:   3'- -CCUCaaCGgaGGUGCaGUGCCUGUGc -5'
24344 5' -54.7 NC_005264.1 + 894 0.66 0.957689
Target:  5'- uGGGUguacgGCC-CCGUGUCGCGGGC-CGc -3'
miRNA:   3'- cCUCAa----CGGaGGUGCAGUGCCUGuGC- -5'
24344 5' -54.7 NC_005264.1 + 8052 0.66 0.95389
Target:  5'- -----cGCCUcuucacCCACGUCGCGGcCGCa -3'
miRNA:   3'- ccucaaCGGA------GGUGCAGUGCCuGUGc -5'
24344 5' -54.7 NC_005264.1 + 124120 0.67 0.926299
Target:  5'- gGGAGggGuCCUCUACGcCugGGG-GCGa -3'
miRNA:   3'- -CCUCaaC-GGAGGUGCaGugCCUgUGC- -5'
24344 5' -54.7 NC_005264.1 + 121951 0.67 0.945617
Target:  5'- cGGAGUcGCCga-GCGagACGGACGgGa -3'
miRNA:   3'- -CCUCAaCGGaggUGCagUGCCUGUgC- -5'
24344 5' -54.7 NC_005264.1 + 14270 0.67 0.945617
Target:  5'- --cGUU-CCUCgggCACGUCGCGGGcCACGa -3'
miRNA:   3'- ccuCAAcGGAG---GUGCAGUGCCU-GUGC- -5'
24344 5' -54.7 NC_005264.1 + 70878 0.67 0.940676
Target:  5'- cGGAGUUucccucgGCC-CCugGUCAUcGGCAUGc -3'
miRNA:   3'- -CCUCAA-------CGGaGGugCAGUGcCUGUGC- -5'
24344 5' -54.7 NC_005264.1 + 94390 0.67 0.936425
Target:  5'- uGGAGgc-CCUCCGCGcgcagacCGCGG-CGCGg -3'
miRNA:   3'- -CCUCaacGGAGGUGCa------GUGCCuGUGC- -5'
24344 5' -54.7 NC_005264.1 + 146628 0.67 0.936425
Target:  5'- aGGGGUcGUCUCCGCGUguCGuGAUAg- -3'
miRNA:   3'- -CCUCAaCGGAGGUGCAguGC-CUGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.