Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24344 | 5' | -54.7 | NC_005264.1 | + | 894 | 0.66 | 0.957689 |
Target: 5'- uGGGUguacgGCC-CCGUGUCGCGGGC-CGc -3' miRNA: 3'- cCUCAa----CGGaGGUGCAGUGCCUGuGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 985 | 0.67 | 0.936425 |
Target: 5'- cGGcAGguggGCCUCCcCcUCGCGGACcgGCGg -3' miRNA: 3'- -CC-UCaa--CGGAGGuGcAGUGCCUG--UGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 2925 | 0.67 | 0.945617 |
Target: 5'- cGGAGUcGCCga-GCGagACGGACGgGa -3' miRNA: 3'- -CCUCAaCGGaggUGCagUGCCUGUgC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 3168 | 0.69 | 0.854224 |
Target: 5'- cGGcGac-CCUCCGCGUCGCGacGGCGCGg -3' miRNA: 3'- -CCuCaacGGAGGUGCAGUGC--CUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 4079 | 0.68 | 0.903238 |
Target: 5'- gGGGcuGUUGCaCgggCgGCGUCGCGG-CACGa -3' miRNA: 3'- -CCU--CAACG-Ga--GgUGCAGUGCCuGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 5026 | 0.69 | 0.861107 |
Target: 5'- aGAGgagGCCacgagguUCCGCGUCGUGGGCGCc -3' miRNA: 3'- cCUCaa-CGG-------AGGUGCAGUGCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 5093 | 0.67 | 0.926299 |
Target: 5'- gGGAGggGuCCUCUACGcCugGGG-GCGa -3' miRNA: 3'- -CCUCaaC-GGAGGUGCaGugCCUgUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 7746 | 0.69 | 0.869296 |
Target: 5'- cGGAaacggGCuCUCCGCGUCGgcaguCGGGCACu -3' miRNA: 3'- -CCUcaa--CG-GAGGUGCAGU-----GCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 8052 | 0.66 | 0.95389 |
Target: 5'- -----cGCCUcuucacCCACGUCGCGGcCGCa -3' miRNA: 3'- ccucaaCGGA------GGUGCAGUGCCuGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 14270 | 0.67 | 0.945617 |
Target: 5'- --cGUU-CCUCgggCACGUCGCGGGcCACGa -3' miRNA: 3'- ccuCAAcGGAG---GUGCAGUGCCU-GUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 23737 | 0.67 | 0.936425 |
Target: 5'- cGuGUUcGCC-CCACGUCGCGGuGCAg- -3' miRNA: 3'- cCuCAA-CGGaGGUGCAGUGCC-UGUgc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 29290 | 0.68 | 0.917522 |
Target: 5'- cGGGcgcgUGCCUCgACGUuuucuuugcgccaugCAUGGACACa -3' miRNA: 3'- cCUCa---ACGGAGgUGCA---------------GUGCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 34129 | 0.66 | 0.964632 |
Target: 5'- ----cUGCCU-CugGUgACGGGCGCGu -3' miRNA: 3'- ccucaACGGAgGugCAgUGCCUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 34380 | 0.66 | 0.963977 |
Target: 5'- aGGAGUUcuuCCUCCACGUguacucucgcuaAUGGGgGCGg -3' miRNA: 3'- -CCUCAAc--GGAGGUGCAg-----------UGCCUgUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 36516 | 0.67 | 0.926299 |
Target: 5'- -----gGCCUCgACGagGCGGGCGCa -3' miRNA: 3'- ccucaaCGGAGgUGCagUGCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 38605 | 0.66 | 0.95389 |
Target: 5'- aGAGcUUcGCCUcgCCGCGgCGCGaGACACGa -3' miRNA: 3'- cCUC-AA-CGGA--GGUGCaGUGC-CUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 38848 | 0.66 | 0.957689 |
Target: 5'- uGAGcgUGCCU--ACGUCGCGGAgcuccuCGCGg -3' miRNA: 3'- cCUCa-ACGGAggUGCAGUGCCU------GUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 44885 | 0.67 | 0.931479 |
Target: 5'- gGGAGgcggGCCcgUCguCGUCugGGGCGgGa -3' miRNA: 3'- -CCUCaa--CGG--AGguGCAGugCCUGUgC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 48884 | 0.69 | 0.854224 |
Target: 5'- ----gUGCCUUCACGUCcgagaaGCGGcACGCGg -3' miRNA: 3'- ccucaACGGAGGUGCAG------UGCC-UGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 59752 | 0.66 | 0.961268 |
Target: 5'- uGGGGcgGCggCUGCGaCGCGGACGCu -3' miRNA: 3'- -CCUCaaCGgaGGUGCaGUGCCUGUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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