Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24344 | 5' | -54.7 | NC_005264.1 | + | 153407 | 0.66 | 0.963977 |
Target: 5'- aGGAGUUcuuCCUCCACGUguacucucgcuaAUGGGgGCGg -3' miRNA: 3'- -CCUCAAc--GGAGGUGCAg-----------UGCCUgUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 14270 | 0.67 | 0.945617 |
Target: 5'- --cGUU-CCUCgggCACGUCGCGGGcCACGa -3' miRNA: 3'- ccuCAAcGGAG---GUGCAGUGCCU-GUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 121951 | 0.67 | 0.945617 |
Target: 5'- cGGAGUcGCCga-GCGagACGGACGgGa -3' miRNA: 3'- -CCUCAaCGGaggUGCagUGCCUGUgC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 64540 | 0.66 | 0.95389 |
Target: 5'- cGGAGgggGgUUCCGCGauaACGGACAUc -3' miRNA: 3'- -CCUCaa-CgGAGGUGCag-UGCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 127079 | 0.66 | 0.95389 |
Target: 5'- -----cGCCUcuucacCCACGUCGCGGcCGCa -3' miRNA: 3'- ccucaaCGGA------GGUGCAGUGCCuGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 157632 | 0.66 | 0.95389 |
Target: 5'- aGAGcUUcGCCUcgCCGCGgCGCGaGACACGa -3' miRNA: 3'- cCUC-AA-CGGA--GGUGCaGUGC-CUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 66521 | 0.66 | 0.95389 |
Target: 5'- cGAGcgUGCCcugacgacgaCCGCGUUGCGGGCGuCGg -3' miRNA: 3'- cCUCa-ACGGa---------GGUGCAGUGCCUGU-GC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 38848 | 0.66 | 0.957689 |
Target: 5'- uGAGcgUGCCU--ACGUCGCGGAgcuccuCGCGg -3' miRNA: 3'- cCUCa-ACGGAggUGCAGUGCCU------GUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 119920 | 0.66 | 0.957689 |
Target: 5'- uGGGUguacgGCC-CCGUGUCGCGGGC-CGc -3' miRNA: 3'- cCUCAa----CGGaGGUGCAGUGCCUGuGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 70878 | 0.67 | 0.940676 |
Target: 5'- cGGAGUUucccucgGCC-CCugGUCAUcGGCAUGc -3' miRNA: 3'- -CCUCAA-------CGGaGGugCAGUGcCUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 146628 | 0.67 | 0.936425 |
Target: 5'- aGGGGUcGUCUCCGCGUguCGuGAUAg- -3' miRNA: 3'- -CCUCAaCGGAGGUGCAguGC-CUGUgc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 94390 | 0.67 | 0.936425 |
Target: 5'- uGGAGgc-CCUCCGCGcgcagacCGCGG-CGCGg -3' miRNA: 3'- -CCUCaacGGAGGUGCa------GUGCCuGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 122195 | 0.69 | 0.854224 |
Target: 5'- cGGcGac-CCUCCGCGUCGCGacGGCGCGg -3' miRNA: 3'- -CCuCaacGGAGGUGCAGUGC--CUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 5026 | 0.69 | 0.861107 |
Target: 5'- aGAGgagGCCacgagguUCCGCGUCGUGGGCGCc -3' miRNA: 3'- cCUCaa-CGG-------AGGUGCAGUGCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 126772 | 0.69 | 0.869296 |
Target: 5'- cGGAaacggGCuCUCCGCGUCGgcaguCGGGCACu -3' miRNA: 3'- -CCUcaa--CG-GAGGUGCAGU-----GCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 117693 | 0.69 | 0.883533 |
Target: 5'- ----cUGCCUCCGCGUCGUGG-CGCc -3' miRNA: 3'- ccucaACGGAGGUGCAGUGCCuGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 123106 | 0.68 | 0.903238 |
Target: 5'- gGGGcuGUUGCaCgggCgGCGUCGCGG-CACGa -3' miRNA: 3'- -CCU--CAACG-Ga--GgUGCAGUGCCuGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 75605 | 0.68 | 0.920884 |
Target: 5'- -uAGUcgGCCUCCAUGccuuUCACGuACACGg -3' miRNA: 3'- ccUCAa-CGGAGGUGC----AGUGCcUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 36516 | 0.67 | 0.926299 |
Target: 5'- -----gGCCUCgACGagGCGGGCGCa -3' miRNA: 3'- ccucaaCGGAGgUGCagUGCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 124120 | 0.67 | 0.926299 |
Target: 5'- gGGAGggGuCCUCUACGcCugGGG-GCGa -3' miRNA: 3'- -CCUCaaC-GGAGGUGCaGugCCUgUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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