Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24344 | 5' | -54.7 | NC_005264.1 | + | 94390 | 0.67 | 0.936425 |
Target: 5'- uGGAGgc-CCUCCGCGcgcagacCGCGG-CGCGg -3' miRNA: 3'- -CCUCaacGGAGGUGCa------GUGCCuGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 985 | 0.67 | 0.936425 |
Target: 5'- cGGcAGguggGCCUCCcCcUCGCGGACcgGCGg -3' miRNA: 3'- -CC-UCaa--CGGAGGuGcAGUGCCUG--UGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 23737 | 0.67 | 0.936425 |
Target: 5'- cGuGUUcGCC-CCACGUCGCGGuGCAg- -3' miRNA: 3'- cCuCAA-CGGaGGUGCAGUGCC-UGUgc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 146628 | 0.67 | 0.936425 |
Target: 5'- aGGGGUcGUCUCCGCGUguCGuGAUAg- -3' miRNA: 3'- -CCUCAaCGGAGGUGCAguGC-CUGUgc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 44885 | 0.67 | 0.931479 |
Target: 5'- gGGAGgcggGCCcgUCguCGUCugGGGCGgGa -3' miRNA: 3'- -CCUCaa--CGG--AGguGCAGugCCUGUgC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 159016 | 0.67 | 0.926299 |
Target: 5'- aGGAGcagGUCUCCGCGcgCAgGGAgCACc -3' miRNA: 3'- -CCUCaa-CGGAGGUGCa-GUgCCU-GUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 5093 | 0.67 | 0.926299 |
Target: 5'- gGGAGggGuCCUCUACGcCugGGG-GCGa -3' miRNA: 3'- -CCUCaaC-GGAGGUGCaGugCCUgUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 95323 | 0.67 | 0.926299 |
Target: 5'- uGGAGaUUGCCgccgccgggcgCCGCGaaACGGACuCGg -3' miRNA: 3'- -CCUC-AACGGa----------GGUGCagUGCCUGuGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 124120 | 0.67 | 0.926299 |
Target: 5'- gGGAGggGuCCUCUACGcCugGGG-GCGa -3' miRNA: 3'- -CCUCaaC-GGAGGUGCaGugCCUgUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 36516 | 0.67 | 0.926299 |
Target: 5'- -----gGCCUCgACGagGCGGGCGCa -3' miRNA: 3'- ccucaaCGGAGgUGCagUGCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 127834 | 0.67 | 0.925768 |
Target: 5'- --cGUUGCCUCCGCGgcggCcgGCGGucuagaacccggcGCGCGa -3' miRNA: 3'- ccuCAACGGAGGUGCa---G--UGCC-------------UGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 75605 | 0.68 | 0.920884 |
Target: 5'- -uAGUcgGCCUCCAUGccuuUCACGuACACGg -3' miRNA: 3'- ccUCAa-CGGAGGUGC----AGUGCcUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 29290 | 0.68 | 0.917522 |
Target: 5'- cGGGcgcgUGCCUCgACGUuuucuuugcgccaugCAUGGACACa -3' miRNA: 3'- cCUCa---ACGGAGgUGCA---------------GUGCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 4079 | 0.68 | 0.903238 |
Target: 5'- gGGGcuGUUGCaCgggCgGCGUCGCGG-CACGa -3' miRNA: 3'- -CCU--CAACG-Ga--GgUGCAGUGCCuGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 123106 | 0.68 | 0.903238 |
Target: 5'- gGGGcuGUUGCaCgggCgGCGUCGCGG-CACGa -3' miRNA: 3'- -CCU--CAACG-Ga--GgUGCAGUGCCuGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 114156 | 0.68 | 0.890325 |
Target: 5'- -cAGUUGaCCUCCACGUUgGCGGAgGuCGa -3' miRNA: 3'- ccUCAAC-GGAGGUGCAG-UGCCUgU-GC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 117693 | 0.69 | 0.883533 |
Target: 5'- ----cUGCCUCCGCGUCGUGG-CGCc -3' miRNA: 3'- ccucaACGGAGGUGCAGUGCCuGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 63031 | 0.69 | 0.869296 |
Target: 5'- cGGGGggGaaauaCUCUACGcCAgGGGCGCGu -3' miRNA: 3'- -CCUCaaCg----GAGGUGCaGUgCCUGUGC- -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 126772 | 0.69 | 0.869296 |
Target: 5'- cGGAaacggGCuCUCCGCGUCGgcaguCGGGCACu -3' miRNA: 3'- -CCUcaa--CG-GAGGUGCAGU-----GCCUGUGc -5' |
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24344 | 5' | -54.7 | NC_005264.1 | + | 84239 | 0.69 | 0.869296 |
Target: 5'- cGAGcUUGCCUaCCGCGU---GGACACGc -3' miRNA: 3'- cCUC-AACGGA-GGUGCAgugCCUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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