Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24345 | 3' | -57.7 | NC_005264.1 | + | 42300 | 0.72 | 0.440795 |
Target: 5'- --cUUCCgGGGCCGuCGCaGGGCUGCCGg -3' miRNA: 3'- aaaGAGGgUUCGGC-GUG-CUCGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 62910 | 0.66 | 0.805592 |
Target: 5'- -gUC-CaCCAgcuuAGCCGCGCGGGCUugcgcgGCCGc -3' miRNA: 3'- aaAGaG-GGU----UCGGCGUGCUCGA------CGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 109499 | 0.66 | 0.805592 |
Target: 5'- -gUC-CUUAGGCUGguUGGGCUGCCc -3' miRNA: 3'- aaAGaGGGUUCGGCguGCUCGACGGu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 66597 | 0.66 | 0.796599 |
Target: 5'- -cUCUCgCUggGCUGCGcCGcGUUGCCGg -3' miRNA: 3'- aaAGAG-GGuuCGGCGU-GCuCGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 12235 | 0.66 | 0.787456 |
Target: 5'- -aUCUCCCAAGCgGUcuugugauuACGGGCcGUCc -3' miRNA: 3'- aaAGAGGGUUCGgCG---------UGCUCGaCGGu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 60236 | 0.67 | 0.772536 |
Target: 5'- -aUUUCCCAgAGCgCGCcauguaugcggucacGCGAGCUGCg- -3' miRNA: 3'- aaAGAGGGU-UCG-GCG---------------UGCUCGACGgu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 130948 | 0.67 | 0.7398 |
Target: 5'- aUUUUCCCAcggucGCCGCugGGGUgaaaguccacuUGCCu -3' miRNA: 3'- aAAGAGGGUu----CGGCGugCUCG-----------ACGGu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 123093 | 0.67 | 0.729946 |
Target: 5'- -aUCUCCCGAcagcggggcuGuuGCACGGGCgGCg- -3' miRNA: 3'- aaAGAGGGUU----------CggCGUGCUCGaCGgu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 53194 | 0.68 | 0.720006 |
Target: 5'- -gUCUCCgGGGCCGC--GAGUUGCa- -3' miRNA: 3'- aaAGAGGgUUCGGCGugCUCGACGgu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 101485 | 0.69 | 0.638513 |
Target: 5'- ----cCCCAAGCaucacgaGCAUGAGgUGCCAa -3' miRNA: 3'- aaagaGGGUUCGg------CGUGCUCgACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 46578 | 0.69 | 0.638513 |
Target: 5'- --gCUUCCAAGUCGCGCGuGCggagGCUc -3' miRNA: 3'- aaaGAGGGUUCGGCGUGCuCGa---CGGu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 89363 | 0.7 | 0.575895 |
Target: 5'- -aUCUCCCGGGCCuuccugacggcaaGCGCcGGCUagGCCAa -3' miRNA: 3'- aaAGAGGGUUCGG-------------CGUGcUCGA--CGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 36227 | 0.7 | 0.566745 |
Target: 5'- -gUUUUCUggGCUGgACGAuGCUGCCAa -3' miRNA: 3'- aaAGAGGGuuCGGCgUGCU-CGACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 146501 | 0.7 | 0.556624 |
Target: 5'- -gUCUCCCuGGGCCGCGCG-GUU-CCAg -3' miRNA: 3'- aaAGAGGG-UUCGGCGUGCuCGAcGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 141982 | 0.67 | 0.768754 |
Target: 5'- cUUUCUCCUuuuAGUCGCGC-AGC-GCCGu -3' miRNA: 3'- -AAAGAGGGu--UCGGCGUGcUCGaCGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 70989 | 0.66 | 0.796599 |
Target: 5'- -gUCgCCC-GGUCGCAgGGGCUGCg- -3' miRNA: 3'- aaAGaGGGuUCGGCGUgCUCGACGgu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 115190 | 0.66 | 0.802911 |
Target: 5'- aUUCUCaCUccgcgacauccgcgAAGCCGCACGAGUauacuuuuaUGUCAu -3' miRNA: 3'- aAAGAG-GG--------------UUCGGCGUGCUCG---------ACGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 94889 | 0.66 | 0.805592 |
Target: 5'- -cUUUCUCGAGCCGCA--GGC-GCCGg -3' miRNA: 3'- aaAGAGGGUUCGGCGUgcUCGaCGGU- -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 60137 | 0.66 | 0.814426 |
Target: 5'- --gCUCUCcAGCUGgACGAGCaGCCu -3' miRNA: 3'- aaaGAGGGuUCGGCgUGCUCGaCGGu -5' |
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24345 | 3' | -57.7 | NC_005264.1 | + | 149126 | 1.06 | 0.00247 |
Target: 5'- aUUUCUCCCAAGCCGCACGAGCUGCCAg -3' miRNA: 3'- -AAAGAGGGUUCGGCGUGCUCGACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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