Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24346 | 3' | -59.3 | NC_005264.1 | + | 63912 | 0.71 | 0.498198 |
Target: 5'- uUCUCCaaGGUGCCGuAUGCGUCGgCGGGg -3' miRNA: 3'- gAGGGGc-UCACGGU-UACGCGGU-GCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 35147 | 0.67 | 0.731694 |
Target: 5'- uUCCCCGGccugGCCGcgGUGUGUCugGuGGg -3' miRNA: 3'- gAGGGGCUca--CGGU--UACGCGGugC-CC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 76649 | 0.67 | 0.741154 |
Target: 5'- -aCCaUCGAG-GCCGAUGCGgCCACcGGu -3' miRNA: 3'- gaGG-GGCUCaCGGUUACGC-GGUGcCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 123624 | 0.67 | 0.750525 |
Target: 5'- cCUCCCC----GCCA--GCGCCGCGGcGg -3' miRNA: 3'- -GAGGGGcucaCGGUuaCGCGGUGCC-C- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 127838 | 0.66 | 0.786951 |
Target: 5'- cCUCUUCGAGcGCCGcucGCGgCACGGa -3' miRNA: 3'- -GAGGGGCUCaCGGUua-CGCgGUGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 10500 | 0.66 | 0.804414 |
Target: 5'- cCUCCCCGAuUGCCugaGCGUCgACGa- -3' miRNA: 3'- -GAGGGGCUcACGGuuaCGCGG-UGCcc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 100981 | 0.66 | 0.804414 |
Target: 5'- cCUCCCCa--UGCCuggaGCGCCGaGGGg -3' miRNA: 3'- -GAGGGGcucACGGuua-CGCGGUgCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 104884 | 0.66 | 0.819633 |
Target: 5'- gCUUUCCGGGaacaggccucagGCCGAacagGCGCCauaGCGGGa -3' miRNA: 3'- -GAGGGGCUCa-----------CGGUUa---CGCGG---UGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 155766 | 0.66 | 0.821293 |
Target: 5'- uUCCCCGcAGcGCgAcgGCGCCGgcCGGc -3' miRNA: 3'- gAGGGGC-UCaCGgUuaCGCGGU--GCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 88033 | 0.67 | 0.731694 |
Target: 5'- uUCCUCGGG-GCCGAaGCGUacaggucaaUACGGGc -3' miRNA: 3'- gAGGGGCUCaCGGUUaCGCG---------GUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 151066 | 0.68 | 0.71254 |
Target: 5'- -gCCCCgGAGUGCgAGccagGCGCC-CGGa -3' miRNA: 3'- gaGGGG-CUCACGgUUa---CGCGGuGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 71428 | 0.68 | 0.683349 |
Target: 5'- aCUCCgCCG-GUGCCccgGCGCUA-GGGc -3' miRNA: 3'- -GAGG-GGCuCACGGuuaCGCGGUgCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 52948 | 0.7 | 0.56505 |
Target: 5'- --gCCCGcG-GCgCAuUGCGCCGCGGGg -3' miRNA: 3'- gagGGGCuCaCG-GUuACGCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 119249 | 0.7 | 0.584625 |
Target: 5'- -cCCCCGAucgcuuuccGUGCCug-GCGCCacagcgagGCGGGc -3' miRNA: 3'- gaGGGGCU---------CACGGuuaCGCGG--------UGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 85017 | 0.69 | 0.604327 |
Target: 5'- uUCgUCGcAG-GCC-AUGUGCCGCGGGg -3' miRNA: 3'- gAGgGGC-UCaCGGuUACGCGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 158967 | 0.69 | 0.624107 |
Target: 5'- -aCCCCGGGUgggGCCAcgGCGaCCuCGGc -3' miRNA: 3'- gaGGGGCUCA---CGGUuaCGC-GGuGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 157525 | 0.68 | 0.663677 |
Target: 5'- uCUCCCCGuacucccGCCAGUcgcccGCcCCACGGGu -3' miRNA: 3'- -GAGGGGCuca----CGGUUA-----CGcGGUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 29477 | 0.68 | 0.673529 |
Target: 5'- uCUCgCCGAGUcGUCGAggaGgGCCGCGGu -3' miRNA: 3'- -GAGgGGCUCA-CGGUUa--CgCGGUGCCc -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 156679 | 0.68 | 0.673529 |
Target: 5'- -gCCCCacacGUGCacgCGAUGCGCgACGGGc -3' miRNA: 3'- gaGGGGcu--CACG---GUUACGCGgUGCCC- -5' |
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24346 | 3' | -59.3 | NC_005264.1 | + | 51227 | 0.68 | 0.683349 |
Target: 5'- gUCCUCGGGauCCAAUuuuacGCGCCGCGGu -3' miRNA: 3'- gAGGGGCUCacGGUUA-----CGCGGUGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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