miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24346 3' -59.3 NC_005264.1 + 63912 0.71 0.498198
Target:  5'- uUCUCCaaGGUGCCGuAUGCGUCGgCGGGg -3'
miRNA:   3'- gAGGGGc-UCACGGU-UACGCGGU-GCCC- -5'
24346 3' -59.3 NC_005264.1 + 35147 0.67 0.731694
Target:  5'- uUCCCCGGccugGCCGcgGUGUGUCugGuGGg -3'
miRNA:   3'- gAGGGGCUca--CGGU--UACGCGGugC-CC- -5'
24346 3' -59.3 NC_005264.1 + 76649 0.67 0.741154
Target:  5'- -aCCaUCGAG-GCCGAUGCGgCCACcGGu -3'
miRNA:   3'- gaGG-GGCUCaCGGUUACGC-GGUGcCC- -5'
24346 3' -59.3 NC_005264.1 + 123624 0.67 0.750525
Target:  5'- cCUCCCC----GCCA--GCGCCGCGGcGg -3'
miRNA:   3'- -GAGGGGcucaCGGUuaCGCGGUGCC-C- -5'
24346 3' -59.3 NC_005264.1 + 127838 0.66 0.786951
Target:  5'- cCUCUUCGAGcGCCGcucGCGgCACGGa -3'
miRNA:   3'- -GAGGGGCUCaCGGUua-CGCgGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 10500 0.66 0.804414
Target:  5'- cCUCCCCGAuUGCCugaGCGUCgACGa- -3'
miRNA:   3'- -GAGGGGCUcACGGuuaCGCGG-UGCcc -5'
24346 3' -59.3 NC_005264.1 + 100981 0.66 0.804414
Target:  5'- cCUCCCCa--UGCCuggaGCGCCGaGGGg -3'
miRNA:   3'- -GAGGGGcucACGGuua-CGCGGUgCCC- -5'
24346 3' -59.3 NC_005264.1 + 104884 0.66 0.819633
Target:  5'- gCUUUCCGGGaacaggccucagGCCGAacagGCGCCauaGCGGGa -3'
miRNA:   3'- -GAGGGGCUCa-----------CGGUUa---CGCGG---UGCCC- -5'
24346 3' -59.3 NC_005264.1 + 155766 0.66 0.821293
Target:  5'- uUCCCCGcAGcGCgAcgGCGCCGgcCGGc -3'
miRNA:   3'- gAGGGGC-UCaCGgUuaCGCGGU--GCCc -5'
24346 3' -59.3 NC_005264.1 + 88033 0.67 0.731694
Target:  5'- uUCCUCGGG-GCCGAaGCGUacaggucaaUACGGGc -3'
miRNA:   3'- gAGGGGCUCaCGGUUaCGCG---------GUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 151066 0.68 0.71254
Target:  5'- -gCCCCgGAGUGCgAGccagGCGCC-CGGa -3'
miRNA:   3'- gaGGGG-CUCACGgUUa---CGCGGuGCCc -5'
24346 3' -59.3 NC_005264.1 + 71428 0.68 0.683349
Target:  5'- aCUCCgCCG-GUGCCccgGCGCUA-GGGc -3'
miRNA:   3'- -GAGG-GGCuCACGGuuaCGCGGUgCCC- -5'
24346 3' -59.3 NC_005264.1 + 52948 0.7 0.56505
Target:  5'- --gCCCGcG-GCgCAuUGCGCCGCGGGg -3'
miRNA:   3'- gagGGGCuCaCG-GUuACGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 119249 0.7 0.584625
Target:  5'- -cCCCCGAucgcuuuccGUGCCug-GCGCCacagcgagGCGGGc -3'
miRNA:   3'- gaGGGGCU---------CACGGuuaCGCGG--------UGCCC- -5'
24346 3' -59.3 NC_005264.1 + 85017 0.69 0.604327
Target:  5'- uUCgUCGcAG-GCC-AUGUGCCGCGGGg -3'
miRNA:   3'- gAGgGGC-UCaCGGuUACGCGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 158967 0.69 0.624107
Target:  5'- -aCCCCGGGUgggGCCAcgGCGaCCuCGGc -3'
miRNA:   3'- gaGGGGCUCA---CGGUuaCGC-GGuGCCc -5'
24346 3' -59.3 NC_005264.1 + 157525 0.68 0.663677
Target:  5'- uCUCCCCGuacucccGCCAGUcgcccGCcCCACGGGu -3'
miRNA:   3'- -GAGGGGCuca----CGGUUA-----CGcGGUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 29477 0.68 0.673529
Target:  5'- uCUCgCCGAGUcGUCGAggaGgGCCGCGGu -3'
miRNA:   3'- -GAGgGGCUCA-CGGUUa--CgCGGUGCCc -5'
24346 3' -59.3 NC_005264.1 + 156679 0.68 0.673529
Target:  5'- -gCCCCacacGUGCacgCGAUGCGCgACGGGc -3'
miRNA:   3'- gaGGGGcu--CACG---GUUACGCGgUGCCC- -5'
24346 3' -59.3 NC_005264.1 + 51227 0.68 0.683349
Target:  5'- gUCCUCGGGauCCAAUuuuacGCGCCGCGGu -3'
miRNA:   3'- gAGGGGCUCacGGUUA-----CGCGGUGCCc -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.