miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24347 3' -51.6 NC_005264.1 + 2510 0.67 0.972255
Target:  5'- cGCGCGacuucAGCGCgGGGGGCgacuUCCcgaGACg -3'
miRNA:   3'- -CGCGU-----UCGCGaUUCUCGau--AGGa--CUG- -5'
24347 3' -51.6 NC_005264.1 + 3819 0.67 0.969269
Target:  5'- gGUGCucccuGCGCgcgGAGAcCUGcUCCUGGCa -3'
miRNA:   3'- -CGCGuu---CGCGa--UUCUcGAU-AGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 9937 0.7 0.914649
Target:  5'- uUGCGGcGCGCUGAGAGCUAUaCU-ACa -3'
miRNA:   3'- cGCGUU-CGCGAUUCUCGAUAgGAcUG- -5'
24347 3' -51.6 NC_005264.1 + 10560 0.73 0.768221
Target:  5'- uGCGCAGGCGCgcaacauaAGCaaaAUCCUGGCc -3'
miRNA:   3'- -CGCGUUCGCGauuc----UCGa--UAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 14392 0.74 0.71778
Target:  5'- uCGCGGGCGCc---GGCUGUUCUGACc -3'
miRNA:   3'- cGCGUUCGCGauucUCGAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 17045 0.71 0.881106
Target:  5'- aGCGCGGcCGCUAAGAGCaugCC-GACc -3'
miRNA:   3'- -CGCGUUcGCGAUUCUCGauaGGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 18147 0.75 0.654744
Target:  5'- gGCGCGAGCgGCUAAGAGacaggcuUGUCggCUGACg -3'
miRNA:   3'- -CGCGUUCG-CGAUUCUCg------AUAG--GACUG- -5'
24347 3' -51.6 NC_005264.1 + 29097 0.66 0.982128
Target:  5'- uGCGUAuaggcucccAGCGCcgcAAGGGCUGUCgUGcCa -3'
miRNA:   3'- -CGCGU---------UCGCGa--UUCUCGAUAGgACuG- -5'
24347 3' -51.6 NC_005264.1 + 32346 0.74 0.707413
Target:  5'- aGUGCuucgggGGGUGCUucGGGGCUGUUCUGGCg -3'
miRNA:   3'- -CGCG------UUCGCGAu-UCUCGAUAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 35004 0.71 0.849953
Target:  5'- cCGCGagcGGCGCUcgaagAGGAGCgcuggccGUCCUGGCc -3'
miRNA:   3'- cGCGU---UCGCGA-----UUCUCGa------UAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 35276 0.75 0.654744
Target:  5'- gGCGCGGGCGC----GGCcgugGUCCUGACu -3'
miRNA:   3'- -CGCGUUCGCGauucUCGa---UAGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 38246 0.67 0.97759
Target:  5'- aGC-CAGGCGCUGuccgcGGuGCUGUCggUGACg -3'
miRNA:   3'- -CGcGUUCGCGAU-----UCuCGAUAGg-ACUG- -5'
24347 3' -51.6 NC_005264.1 + 39225 0.66 0.989092
Target:  5'- gGCGCuGGCGggGAGGGCcugcguUCCcGGCu -3'
miRNA:   3'- -CGCGuUCGCgaUUCUCGau----AGGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 43456 0.72 0.807199
Target:  5'- aGCGCGuuguguuugaucuucGCGCgcAGAGCUcgCUUGACa -3'
miRNA:   3'- -CGCGUu--------------CGCGauUCUCGAuaGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 50582 0.68 0.95895
Target:  5'- aGCGCAcgcGGCGCUGAGcAGCccggcgCUgGACg -3'
miRNA:   3'- -CGCGU---UCGCGAUUC-UCGaua---GGaCUG- -5'
24347 3' -51.6 NC_005264.1 + 52882 0.66 0.982128
Target:  5'- cGCGCGAGCGa--GGGGCUG-CgUGGu -3'
miRNA:   3'- -CGCGUUCGCgauUCUCGAUaGgACUg -5'
24347 3' -51.6 NC_005264.1 + 53256 0.67 0.975026
Target:  5'- cCGCGGGCGCgugucuGGcuuGCUGUCCcgcGGCg -3'
miRNA:   3'- cGCGUUCGCGau----UCu--CGAUAGGa--CUG- -5'
24347 3' -51.6 NC_005264.1 + 60699 0.67 0.969269
Target:  5'- gGC-CAGgaaucGCGCUuAGAGCguauuUCCUGGCg -3'
miRNA:   3'- -CGcGUU-----CGCGAuUCUCGau---AGGACUG- -5'
24347 3' -51.6 NC_005264.1 + 61120 0.66 0.984119
Target:  5'- aGUGUucGUGCUGAu-GCUGUCCUaccGGCa -3'
miRNA:   3'- -CGCGuuCGCGAUUcuCGAUAGGA---CUG- -5'
24347 3' -51.6 NC_005264.1 + 64487 0.68 0.95895
Target:  5'- -gGCAAGCGCgccgaGAGAGUcg-CCUGGa -3'
miRNA:   3'- cgCGUUCGCGa----UUCUCGauaGGACUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.