Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24347 | 3' | -51.6 | NC_005264.1 | + | 90158 | 0.67 | 0.975026 |
Target: 5'- aCGCAGGCGaucaggGGGGGCgacUCUGACu -3' miRNA: 3'- cGCGUUCGCga----UUCUCGauaGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 95151 | 0.69 | 0.941809 |
Target: 5'- gGCcCGGGCGC--AGAGCUAUUCUGcCc -3' miRNA: 3'- -CGcGUUCGCGauUCUCGAUAGGACuG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 114362 | 0.68 | 0.94647 |
Target: 5'- cGCGCAAcGCGC--GGGGCUA--CUGAUg -3' miRNA: 3'- -CGCGUU-CGCGauUCUCGAUagGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 99855 | 0.68 | 0.955036 |
Target: 5'- aGCGCuacugacguGCGCcAAGGGCUgggcgaGUCCgGACg -3' miRNA: 3'- -CGCGuu-------CGCGaUUCUCGA------UAGGaCUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 50582 | 0.68 | 0.95895 |
Target: 5'- aGCGCAcgcGGCGCUGAGcAGCccggcgCUgGACg -3' miRNA: 3'- -CGCGU---UCGCGAUUC-UCGaua---GGaCUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 64487 | 0.68 | 0.95895 |
Target: 5'- -gGCAAGCGCgccgaGAGAGUcg-CCUGGa -3' miRNA: 3'- cgCGUUCGCGa----UUCUCGauaGGACUg -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 3819 | 0.67 | 0.969269 |
Target: 5'- gGUGCucccuGCGCgcgGAGAcCUGcUCCUGGCa -3' miRNA: 3'- -CGCGuu---CGCGa--UUCUcGAU-AGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 82050 | 0.67 | 0.969269 |
Target: 5'- uGCGCAGGCGCgccuccucuAGAGCg--Cg-GACa -3' miRNA: 3'- -CGCGUUCGCGau-------UCUCGauaGgaCUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 121537 | 0.67 | 0.972255 |
Target: 5'- cGCGCGacuucAGCGCgGGGGGCgacuUCCcgaGACg -3' miRNA: 3'- -CGCGU-----UCGCGaUUCUCGau--AGGa--CUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 70364 | 0.69 | 0.940361 |
Target: 5'- uGCGuCAAGaUGCUGaugaacggcucgguGGAGCUGgagggcggCCUGACg -3' miRNA: 3'- -CGC-GUUC-GCGAU--------------UCUCGAUa-------GGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 9937 | 0.7 | 0.914649 |
Target: 5'- uUGCGGcGCGCUGAGAGCUAUaCU-ACa -3' miRNA: 3'- cGCGUU-CGCGAUUCUCGAUAgGAcUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 17045 | 0.71 | 0.881106 |
Target: 5'- aGCGCGGcCGCUAAGAGCaugCC-GACc -3' miRNA: 3'- -CGCGUUcGCGAUUCUCGauaGGaCUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 18147 | 0.75 | 0.654744 |
Target: 5'- gGCGCGAGCgGCUAAGAGacaggcuUGUCggCUGACg -3' miRNA: 3'- -CGCGUUCG-CGAUUCUCg------AUAG--GACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 35276 | 0.75 | 0.654744 |
Target: 5'- gGCGCGGGCGC----GGCcgugGUCCUGACu -3' miRNA: 3'- -CGCGUUCGCGauucUCGa---UAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 151373 | 0.74 | 0.707413 |
Target: 5'- aGUGCuucgggGGGUGCUucGGGGCUGUUCUGGCg -3' miRNA: 3'- -CGCG------UUCGCGAu-UCUCGAUAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 14392 | 0.74 | 0.71778 |
Target: 5'- uCGCGGGCGCc---GGCUGUUCUGACc -3' miRNA: 3'- cGCGUUCGCGauucUCGAUAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 116420 | 0.74 | 0.738267 |
Target: 5'- cGCgGCAGGuCGCUGGGGGCg--UCUGGCc -3' miRNA: 3'- -CG-CGUUC-GCGAUUCUCGauaGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 10560 | 0.73 | 0.768221 |
Target: 5'- uGCGCAGGCGCgcaacauaAGCaaaAUCCUGGCc -3' miRNA: 3'- -CGCGUUCGCGauuc----UCGa--UAGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 43456 | 0.72 | 0.807199 |
Target: 5'- aGCGCGuuguguuugaucuucGCGCgcAGAGCUcgCUUGACa -3' miRNA: 3'- -CGCGUu--------------CGCGauUCUCGAuaGGACUG- -5' |
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24347 | 3' | -51.6 | NC_005264.1 | + | 154031 | 0.71 | 0.849953 |
Target: 5'- cCGCGagcGGCGCUcgaagAGGAGCgcuggccGUCCUGGCc -3' miRNA: 3'- cGCGU---UCGCGA-----UUCUCGa------UAGGACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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