miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 3' -56.5 NC_005264.1 + 1615 0.66 0.887893
Target:  5'- aUACGGGacg-CC-GGugGGCGcGGCUCc -3'
miRNA:   3'- -AUGCCCguuaGGaCCugCUGC-UCGAG- -5'
24348 3' -56.5 NC_005264.1 + 3330 0.67 0.851021
Target:  5'- gACGGGCAAUaCUGGccuUGGCGAgggucuuucGCUCc -3'
miRNA:   3'- aUGCCCGUUAgGACCu--GCUGCU---------CGAG- -5'
24348 3' -56.5 NC_005264.1 + 5701 0.69 0.753828
Target:  5'- cGCGGGCAAcgCCUGG-CGGCGGa--- -3'
miRNA:   3'- aUGCCCGUUa-GGACCuGCUGCUcgag -5'
24348 3' -56.5 NC_005264.1 + 8783 0.69 0.724568
Target:  5'- gGCGGGCGucggCCaGGACGGCcAGCg- -3'
miRNA:   3'- aUGCCCGUua--GGaCCUGCUGcUCGag -5'
24348 3' -56.5 NC_005264.1 + 9748 0.73 0.522362
Target:  5'- cUGCGGGCuuccuucuucucGGUUCUGGuuugugGCGACGAGUUCc -3'
miRNA:   3'- -AUGCCCG------------UUAGGACC------UGCUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 12256 0.69 0.714642
Target:  5'- uUACGGGCcGUcCCUGaGAUGACGAuGC-Cg -3'
miRNA:   3'- -AUGCCCGuUA-GGAC-CUGCUGCU-CGaG- -5'
24348 3' -56.5 NC_005264.1 + 13243 0.67 0.850231
Target:  5'- aGCaGGUggUCCUcuaccgacucggaGGACGACGAggGUUCg -3'
miRNA:   3'- aUGcCCGuuAGGA-------------CCUGCUGCU--CGAG- -5'
24348 3' -56.5 NC_005264.1 + 15144 0.68 0.800326
Target:  5'- cACGGGCAAUCgCguuGCGGCGAuGCUg -3'
miRNA:   3'- aUGCCCGUUAG-GaccUGCUGCU-CGAg -5'
24348 3' -56.5 NC_005264.1 + 15223 0.7 0.674328
Target:  5'- gACGcGGCGAUCCUGcGcucuaaguucaACG-CGGGCUCg -3'
miRNA:   3'- aUGC-CCGUUAGGAC-C-----------UGCuGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 16566 0.66 0.901095
Target:  5'- -gUGGGCGGcgCCgGGGCGGCGGcGCa- -3'
miRNA:   3'- auGCCCGUUa-GGaCCUGCUGCU-CGag -5'
24348 3' -56.5 NC_005264.1 + 19025 0.67 0.858817
Target:  5'- aGCGGGCGuga-UGGACGGCaGGCg- -3'
miRNA:   3'- aUGCCCGUuaggACCUGCUGcUCGag -5'
24348 3' -56.5 NC_005264.1 + 22769 0.68 0.791296
Target:  5'- gGCGGGCAAUgagGGgcGCGGCGAcacuGCUCa -3'
miRNA:   3'- aUGCCCGUUAggaCC--UGCUGCU----CGAG- -5'
24348 3' -56.5 NC_005264.1 + 26276 0.7 0.674328
Target:  5'- cGCGGcGCGuUCCUGGAUcGCGAucgGCUCc -3'
miRNA:   3'- aUGCC-CGUuAGGACCUGcUGCU---CGAG- -5'
24348 3' -56.5 NC_005264.1 + 38334 0.7 0.664141
Target:  5'- gGCGGGCccuggccguGAUgCUGGGCGGCgGGGCg- -3'
miRNA:   3'- aUGCCCG---------UUAgGACCUGCUG-CUCGag -5'
24348 3' -56.5 NC_005264.1 + 39063 0.69 0.74417
Target:  5'- cGCGcGGCGGUCCacccccGGACGcCG-GCUCg -3'
miRNA:   3'- aUGC-CCGUUAGGa-----CCUGCuGCuCGAG- -5'
24348 3' -56.5 NC_005264.1 + 41591 0.67 0.858817
Target:  5'- gACGuGGC-GUCUaaacaUGGGCccgcuGACGAGCUCg -3'
miRNA:   3'- aUGC-CCGuUAGG-----ACCUG-----CUGCUCGAG- -5'
24348 3' -56.5 NC_005264.1 + 43398 0.68 0.772814
Target:  5'- -gUGGGCGG-CCUGGGCaGCGAGaUCg -3'
miRNA:   3'- auGCCCGUUaGGACCUGcUGCUCgAG- -5'
24348 3' -56.5 NC_005264.1 + 44992 0.66 0.901095
Target:  5'- --aGGGCGAgCCUGGcgagaacgGCGACGAGa-- -3'
miRNA:   3'- augCCCGUUaGGACC--------UGCUGCUCgag -5'
24348 3' -56.5 NC_005264.1 + 45274 0.68 0.782122
Target:  5'- -uCGGGCuGUCCcuugucgaacgUGGACGGCaccuGGCUCa -3'
miRNA:   3'- auGCCCGuUAGG-----------ACCUGCUGc---UCGAG- -5'
24348 3' -56.5 NC_005264.1 + 47017 0.69 0.724568
Target:  5'- cGCGGuCAGUCCUGG--GGCGAGCg- -3'
miRNA:   3'- aUGCCcGUUAGGACCugCUGCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.