miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 108228 0.66 0.663016
Target:  5'- -cGUGGCCGaUGUCCCgcaCG-CGCCGa- -3'
miRNA:   3'- gaCAUCGGC-GCGGGGa--GCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 93800 0.66 0.692375
Target:  5'- ---cGGCCGCGgCCaagagaUCGAcuCGCCGUGg -3'
miRNA:   3'- gacaUCGGCGCgGGg-----AGCU--GCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 33324 0.66 0.692375
Target:  5'- -aGUGGuuCCGuCGCCUC-CGGCGCCGc- -3'
miRNA:   3'- gaCAUC--GGC-GCGGGGaGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 122455 0.66 0.672836
Target:  5'- -cGUagGGCCGCGCCCgcgcugCUCGcaaaGCGCCa-- -3'
miRNA:   3'- gaCA--UCGGCGCGGG------GAGC----UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 3428 0.66 0.672836
Target:  5'- -cGUagGGCCGCGCCCgcgcugCUCGcaaaGCGCCa-- -3'
miRNA:   3'- gaCA--UCGGCGCGGG------GAGC----UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 45406 0.66 0.682625
Target:  5'- aUGgagGGCgGCGCCCUgCG-CGCCGc- -3'
miRNA:   3'- gACa--UCGgCGCGGGGaGCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 104942 0.66 0.682625
Target:  5'- ---cAGCCGUGCCaagcgccgagCCUCGugGCCc-- -3'
miRNA:   3'- gacaUCGGCGCGG----------GGAGCugCGGcau -5'
24348 5' -61.4 NC_005264.1 + 69572 0.66 0.692375
Target:  5'- aCUGaAGCCGgGgCCCU-GGCGCCa-- -3'
miRNA:   3'- -GACaUCGGCgCgGGGAgCUGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 98428 0.66 0.692375
Target:  5'- ----cGCCGUGCCCg-CGGCGUCGg- -3'
miRNA:   3'- gacauCGGCGCGGGgaGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 54329 0.66 0.702079
Target:  5'- -gGUGGUgGCGCa---CGACGCCGUAc -3'
miRNA:   3'- gaCAUCGgCGCGgggaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 19743 0.66 0.672836
Target:  5'- -gGUucGCCGUGCCCCcagcaUCG-CGCCGc- -3'
miRNA:   3'- gaCAu-CGGCGCGGGG-----AGCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 58910 0.66 0.653173
Target:  5'- -cGgauGCCGC-CUCCUCGAUGgCGUAg -3'
miRNA:   3'- gaCau-CGGCGcGGGGAGCUGCgGCAU- -5'
24348 5' -61.4 NC_005264.1 + 133721 0.67 0.59404
Target:  5'- gCUGccucUGGCCGacaGCCCUUgCGGCGCUGg- -3'
miRNA:   3'- -GAC----AUCGGCg--CGGGGA-GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 103260 0.67 0.593058
Target:  5'- -aGUGGCCuucuucuGCGCggagguccuaagCCC-CGACGCCGUGc -3'
miRNA:   3'- gaCAUCGG-------CGCG------------GGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 14261 0.67 0.613718
Target:  5'- aCUGUAG-CGCGUUCCUCGggcACGUCGc- -3'
miRNA:   3'- -GACAUCgGCGCGGGGAGC---UGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 133608 0.67 0.62358
Target:  5'- ----cGCUGUGCUCCUCGACcGCUGg- -3'
miRNA:   3'- gacauCGGCGCGGGGAGCUG-CGGCau -5'
24348 5' -61.4 NC_005264.1 + 67384 0.67 0.62358
Target:  5'- ----cGCUGCGCCCgC-CGGCGCgGUAg -3'
miRNA:   3'- gacauCGGCGCGGG-GaGCUGCGgCAU- -5'
24348 5' -61.4 NC_005264.1 + 156365 0.67 0.62358
Target:  5'- --aUGGCCGCGCaCCC-CGAcguuCGCCGc- -3'
miRNA:   3'- gacAUCGGCGCG-GGGaGCU----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 85412 0.67 0.633447
Target:  5'- -aGUGGUCGCGaaccaCCCUC-ACGUCGUc -3'
miRNA:   3'- gaCAUCGGCGCg----GGGAGcUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 96148 0.67 0.603869
Target:  5'- -cGUAGUaCGCcCCCCgccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCG-GCGcGGGGa--GCUGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.