miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 145698 0.96 0.008662
Target:  5'- cCUGUAGCCGC-CCCCUCGACGCCGUAc -3'
miRNA:   3'- -GACAUCGGCGcGGGGAGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 61441 0.74 0.247574
Target:  5'- ---cGGCC-CGCUCCUCGGCGCCGa- -3'
miRNA:   3'- gacaUCGGcGCGGGGAGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 140069 0.74 0.259278
Target:  5'- gUGUcGCCGCGCCCCUCauugccCGCCGc- -3'
miRNA:   3'- gACAuCGGCGCGGGGAGcu----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 136456 0.71 0.37721
Target:  5'- gCUGaGGCCGCGCUCagagaCGGCGCCGc- -3'
miRNA:   3'- -GACaUCGGCGCGGGga---GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 19919 0.71 0.393255
Target:  5'- gUGgcGCCGUGCCaguaCCUCGAggacgcaucguCGCCGUGa -3'
miRNA:   3'- gACauCGGCGCGG----GGAGCU-----------GCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 161221 0.71 0.401441
Target:  5'- uUGgAGCCGCGCCCaC-CGGCGucCCGUAu -3'
miRNA:   3'- gACaUCGGCGCGGG-GaGCUGC--GGCAU- -5'
24348 5' -61.4 NC_005264.1 + 42194 0.71 0.401441
Target:  5'- uUGgAGCCGCGCCCaC-CGGCGucCCGUAu -3'
miRNA:   3'- gACaUCGGCGCGGG-GaGCUGC--GGCAU- -5'
24348 5' -61.4 NC_005264.1 + 2757 0.7 0.42664
Target:  5'- ----cGgCGCGUCCCcCGGCGCCGUAc -3'
miRNA:   3'- gacauCgGCGCGGGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 121783 0.7 0.42664
Target:  5'- ----cGgCGCGUCCCcCGGCGCCGUAc -3'
miRNA:   3'- gacauCgGCGCGGGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 85101 0.7 0.42664
Target:  5'- -gGUGGCCGgcgaGUCCCUCGGCGCa--- -3'
miRNA:   3'- gaCAUCGGCg---CGGGGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 2380 0.7 0.435246
Target:  5'- -aGUGGCCGuCGCCCgCaggagccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCGGC-GCGGG-Ga------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 121407 0.7 0.435246
Target:  5'- -aGUGGCCGuCGCCCgCaggagccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCGGC-GCGGG-Ga------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 66602 0.7 0.443951
Target:  5'- gCUG-GGCUGCGCCgCguugcCGGCGCCGUc -3'
miRNA:   3'- -GACaUCGGCGCGGgGa----GCUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 87723 0.7 0.46165
Target:  5'- ---cGGCCauuugacuGCGCCCCagcUCGGCGCCGg- -3'
miRNA:   3'- gacaUCGG--------CGCGGGG---AGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 128447 0.7 0.470638
Target:  5'- cCUGagcucgAGCCGCGCCCgUCuuuGGCGUCGg- -3'
miRNA:   3'- -GACa-----UCGGCGCGGGgAG---CUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 82207 0.69 0.479714
Target:  5'- -cGUGGCCGCGCguccaucgUCCUCGGgGCCc-- -3'
miRNA:   3'- gaCAUCGGCGCG--------GGGAGCUgCGGcau -5'
24348 5' -61.4 NC_005264.1 + 146270 0.69 0.498117
Target:  5'- aUGUGcGCCGcCGCCCC--GGCGCCGc- -3'
miRNA:   3'- gACAU-CGGC-GCGGGGagCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 47213 0.69 0.526291
Target:  5'- -aGUAcGCgGCGCCCuUUCGACuGCCGg- -3'
miRNA:   3'- gaCAU-CGgCGCGGG-GAGCUG-CGGCau -5'
24348 5' -61.4 NC_005264.1 + 27995 0.68 0.535817
Target:  5'- -cGUAGCCGCGgCCCaUCGAUccagGUCGg- -3'
miRNA:   3'- gaCAUCGGCGCgGGG-AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 152304 0.68 0.545402
Target:  5'- -----uCCGCGCCCCUgagggCGGCGCCGc- -3'
miRNA:   3'- gacaucGGCGCGGGGA-----GCUGCGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.