miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 2380 0.7 0.435246
Target:  5'- -aGUGGCCGuCGCCCgCaggagccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCGGC-GCGGG-Ga------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 2757 0.7 0.42664
Target:  5'- ----cGgCGCGUCCCcCGGCGCCGUAc -3'
miRNA:   3'- gacauCgGCGCGGGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 3428 0.66 0.672836
Target:  5'- -cGUagGGCCGCGCCCgcgcugCUCGcaaaGCGCCa-- -3'
miRNA:   3'- gaCA--UCGGCGCGGG------GAGC----UGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 14261 0.67 0.613718
Target:  5'- aCUGUAG-CGCGUUCCUCGggcACGUCGc- -3'
miRNA:   3'- -GACAUCgGCGCGGGGAGC---UGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 15144 0.67 0.643314
Target:  5'- uCUGUcugcaccGCCGCGUCUCUgGACGaCCGa- -3'
miRNA:   3'- -GACAu------CGGCGCGGGGAgCUGC-GGCau -5'
24348 5' -61.4 NC_005264.1 + 19743 0.66 0.672836
Target:  5'- -gGUucGCCGUGCCCCcagcaUCG-CGCCGc- -3'
miRNA:   3'- gaCAu-CGGCGCGGGG-----AGCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 19919 0.71 0.393255
Target:  5'- gUGgcGCCGUGCCaguaCCUCGAggacgcaucguCGCCGUGa -3'
miRNA:   3'- gACauCGGCGCGG----GGAGCU-----------GCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 22308 0.67 0.603869
Target:  5'- ---cAGCCGCGCCucagacaaCCUCGAC-CCGa- -3'
miRNA:   3'- gacaUCGGCGCGG--------GGAGCUGcGGCau -5'
24348 5' -61.4 NC_005264.1 + 27995 0.68 0.535817
Target:  5'- -cGUAGCCGCGgCCCaUCGAUccagGUCGg- -3'
miRNA:   3'- gaCAUCGGCGCgGGG-AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 30820 0.68 0.584237
Target:  5'- ---gAGUCGCGUCCCUaaaacguaaucUGGCGCCGg- -3'
miRNA:   3'- gacaUCGGCGCGGGGA-----------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 33277 0.68 0.545402
Target:  5'- -----uCCGCGCCCCUgagggCGGCGCCGc- -3'
miRNA:   3'- gacaucGGCGCGGGGA-----GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 33324 0.66 0.692375
Target:  5'- -aGUGGuuCCGuCGCCUC-CGGCGCCGc- -3'
miRNA:   3'- gaCAUC--GGC-GCGGGGaGCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 37166 0.68 0.584237
Target:  5'- uCUGccggAGCUuccggacauGUGCCCCcgCGugGCCGUGg -3'
miRNA:   3'- -GACa---UCGG---------CGCGGGGa-GCugCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 37338 0.67 0.62358
Target:  5'- --aUGGCCGCGCaCCC-CGAcguuCGCCGc- -3'
miRNA:   3'- gacAUCGGCGCG-GGGaGCU----GCGGCau -5'
24348 5' -61.4 NC_005264.1 + 40940 0.68 0.574465
Target:  5'- ----cGCCGCGCCCCggUCGAUcgcaGCCGc- -3'
miRNA:   3'- gacauCGGCGCGGGG--AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 41027 0.68 0.574465
Target:  5'- gCUGU-GCCuuccacGUGCCCCUCcuaacguauugGGCGCCGUc -3'
miRNA:   3'- -GACAuCGG------CGCGGGGAG-----------CUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 42194 0.71 0.401441
Target:  5'- uUGgAGCCGCGCCCaC-CGGCGucCCGUAu -3'
miRNA:   3'- gACaUCGGCGCGGG-GaGCUGC--GGCAU- -5'
24348 5' -61.4 NC_005264.1 + 45406 0.66 0.682625
Target:  5'- aUGgagGGCgGCGCCCUgCG-CGCCGc- -3'
miRNA:   3'- gACa--UCGgCGCGGGGaGCuGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 47213 0.69 0.526291
Target:  5'- -aGUAcGCgGCGCCCuUUCGACuGCCGg- -3'
miRNA:   3'- gaCAU-CGgCGCGGG-GAGCUG-CGGCau -5'
24348 5' -61.4 NC_005264.1 + 52940 0.68 0.574465
Target:  5'- --aUGGCCGCGCCCg-CGGCGCa--- -3'
miRNA:   3'- gacAUCGGCGCGGGgaGCUGCGgcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.