miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24348 5' -61.4 NC_005264.1 + 96148 0.67 0.603869
Target:  5'- -cGUAGUaCGCcCCCCgccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCG-GCGcGGGGa--GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 41027 0.68 0.574465
Target:  5'- gCUGU-GCCuuccacGUGCCCCUCcuaacguauugGGCGCCGUc -3'
miRNA:   3'- -GACAuCGG------CGCGGGGAG-----------CUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 159967 0.68 0.574465
Target:  5'- ----cGCCGCGCCCCggUCGAUcgcaGCCGc- -3'
miRNA:   3'- gacauCGGCGCGGGG--AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 52940 0.68 0.574465
Target:  5'- --aUGGCCGCGCCCg-CGGCGCa--- -3'
miRNA:   3'- gacAUCGGCGCGGGgaGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 156193 0.68 0.584237
Target:  5'- uCUGccggAGCUuccggacauGUGCCCCcgCGugGCCGUGg -3'
miRNA:   3'- -GACa---UCGG---------CGCGGGGa-GCugCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 30820 0.68 0.584237
Target:  5'- ---gAGUCGCGUCCCUaaaacguaaucUGGCGCCGg- -3'
miRNA:   3'- gacaUCGGCGCGGGGA-----------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 65945 0.68 0.584237
Target:  5'- ----uGCCGCG-CCCUCGcGCGCCGc- -3'
miRNA:   3'- gacauCGGCGCgGGGAGC-UGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 103260 0.67 0.593058
Target:  5'- -aGUGGCCuucuucuGCGCggagguccuaagCCC-CGACGCCGUGc -3'
miRNA:   3'- gaCAUCGG-------CGCG------------GGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 133721 0.67 0.59404
Target:  5'- gCUGccucUGGCCGacaGCCCUUgCGGCGCUGg- -3'
miRNA:   3'- -GAC----AUCGGCg--CGGGGA-GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 152304 0.68 0.545402
Target:  5'- -----uCCGCGCCCCUgagggCGGCGCCGc- -3'
miRNA:   3'- gacaucGGCGCGGGGA-----GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 56963 0.68 0.545402
Target:  5'- gCUGUGGCgGCgacgaGUCCCUCGuCGCCc-- -3'
miRNA:   3'- -GACAUCGgCG-----CGGGGAGCuGCGGcau -5'
24348 5' -61.4 NC_005264.1 + 27995 0.68 0.535817
Target:  5'- -cGUAGCCGCGgCCCaUCGAUccagGUCGg- -3'
miRNA:   3'- gaCAUCGGCGCgGGG-AGCUG----CGGCau -5'
24348 5' -61.4 NC_005264.1 + 136456 0.71 0.37721
Target:  5'- gCUGaGGCCGCGCUCagagaCGGCGCCGc- -3'
miRNA:   3'- -GACaUCGGCGCGGGga---GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 19919 0.71 0.393255
Target:  5'- gUGgcGCCGUGCCaguaCCUCGAggacgcaucguCGCCGUGa -3'
miRNA:   3'- gACauCGGCGCGG----GGAGCU-----------GCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 161221 0.71 0.401441
Target:  5'- uUGgAGCCGCGCCCaC-CGGCGucCCGUAu -3'
miRNA:   3'- gACaUCGGCGCGGG-GaGCUGC--GGCAU- -5'
24348 5' -61.4 NC_005264.1 + 85101 0.7 0.42664
Target:  5'- -gGUGGCCGgcgaGUCCCUCGGCGCa--- -3'
miRNA:   3'- gaCAUCGGCg---CGGGGAGCUGCGgcau -5'
24348 5' -61.4 NC_005264.1 + 121783 0.7 0.42664
Target:  5'- ----cGgCGCGUCCCcCGGCGCCGUAc -3'
miRNA:   3'- gacauCgGCGCGGGGaGCUGCGGCAU- -5'
24348 5' -61.4 NC_005264.1 + 121407 0.7 0.435246
Target:  5'- -aGUGGCCGuCGCCCgCaggagccCGGCGCCGg- -3'
miRNA:   3'- gaCAUCGGC-GCGGG-Ga------GCUGCGGCau -5'
24348 5' -61.4 NC_005264.1 + 66602 0.7 0.443951
Target:  5'- gCUG-GGCUGCGCCgCguugcCGGCGCCGUc -3'
miRNA:   3'- -GACaUCGGCGCGGgGa----GCUGCGGCAu -5'
24348 5' -61.4 NC_005264.1 + 82207 0.69 0.479714
Target:  5'- -cGUGGCCGCGCguccaucgUCCUCGGgGCCc-- -3'
miRNA:   3'- gaCAUCGGCGCG--------GGGAGCUgCGGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.