Results 21 - 40 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 67384 | 0.67 | 0.62358 |
Target: 5'- ----cGCUGCGCCCgC-CGGCGCgGUAg -3' miRNA: 3'- gacauCGGCGCGGG-GaGCUGCGgCAU- -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 135382 | 0.67 | 0.62358 |
Target: 5'- aUGUccuuuGCUGCGCCgCUCGGCGCa--- -3' miRNA: 3'- gACAu----CGGCGCGGgGAGCUGCGgcau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 37338 | 0.67 | 0.62358 |
Target: 5'- --aUGGCCGCGCaCCC-CGAcguuCGCCGc- -3' miRNA: 3'- gacAUCGGCGCG-GGGaGCU----GCGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 68315 | 0.67 | 0.62358 |
Target: 5'- -cGgcGCCGCuGCCCUcccaCGugGCCGa- -3' miRNA: 3'- gaCauCGGCG-CGGGGa---GCugCGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 14261 | 0.67 | 0.613718 |
Target: 5'- aCUGUAG-CGCGUUCCUCGggcACGUCGc- -3' miRNA: 3'- -GACAUCgGCGCGGGGAGC---UGCGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 140848 | 0.67 | 0.613718 |
Target: 5'- ----cGCCGCGCCUUUCGcuuGCGCCa-- -3' miRNA: 3'- gacauCGGCGCGGGGAGC---UGCGGcau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 96148 | 0.67 | 0.603869 |
Target: 5'- -cGUAGUaCGCcCCCCgccCGGCGCCGg- -3' miRNA: 3'- gaCAUCG-GCGcGGGGa--GCUGCGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 22308 | 0.67 | 0.603869 |
Target: 5'- ---cAGCCGCGCCucagacaaCCUCGAC-CCGa- -3' miRNA: 3'- gacaUCGGCGCGG--------GGAGCUGcGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 133721 | 0.67 | 0.59404 |
Target: 5'- gCUGccucUGGCCGacaGCCCUUgCGGCGCUGg- -3' miRNA: 3'- -GAC----AUCGGCg--CGGGGA-GCUGCGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 100151 | 0.67 | 0.59404 |
Target: 5'- -gGUAGCaCGCGUUCUUCGcgcugACGCCGa- -3' miRNA: 3'- gaCAUCG-GCGCGGGGAGC-----UGCGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 103260 | 0.67 | 0.593058 |
Target: 5'- -aGUGGCCuucuucuGCGCggagguccuaagCCC-CGACGCCGUGc -3' miRNA: 3'- gaCAUCGG-------CGCG------------GGGaGCUGCGGCAU- -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 30820 | 0.68 | 0.584237 |
Target: 5'- ---gAGUCGCGUCCCUaaaacguaaucUGGCGCCGg- -3' miRNA: 3'- gacaUCGGCGCGGGGA-----------GCUGCGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 65945 | 0.68 | 0.584237 |
Target: 5'- ----uGCCGCG-CCCUCGcGCGCCGc- -3' miRNA: 3'- gacauCGGCGCgGGGAGC-UGCGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 151844 | 0.68 | 0.584237 |
Target: 5'- aCUGgGGCCGcCGCUCCggCGGCGacaCGUGg -3' miRNA: 3'- -GACaUCGGC-GCGGGGa-GCUGCg--GCAU- -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 37166 | 0.68 | 0.584237 |
Target: 5'- uCUGccggAGCUuccggacauGUGCCCCcgCGugGCCGUGg -3' miRNA: 3'- -GACa---UCGG---------CGCGGGGa-GCugCGGCAU- -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 156193 | 0.68 | 0.584237 |
Target: 5'- uCUGccggAGCUuccggacauGUGCCCCcgCGugGCCGUGg -3' miRNA: 3'- -GACa---UCGG---------CGCGGGGa-GCugCGGCAU- -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 40940 | 0.68 | 0.574465 |
Target: 5'- ----cGCCGCGCCCCggUCGAUcgcaGCCGc- -3' miRNA: 3'- gacauCGGCGCGGGG--AGCUG----CGGCau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 41027 | 0.68 | 0.574465 |
Target: 5'- gCUGU-GCCuuccacGUGCCCCUCcuaacguauugGGCGCCGUc -3' miRNA: 3'- -GACAuCGG------CGCGGGGAG-----------CUGCGGCAu -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 52940 | 0.68 | 0.574465 |
Target: 5'- --aUGGCCGCGCCCg-CGGCGCa--- -3' miRNA: 3'- gacAUCGGCGCGGGgaGCUGCGgcau -5' |
|||||||
24348 | 5' | -61.4 | NC_005264.1 | + | 159967 | 0.68 | 0.574465 |
Target: 5'- ----cGCCGCGCCCCggUCGAUcgcaGCCGc- -3' miRNA: 3'- gacauCGGCGCGGGG--AGCUG----CGGCau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home