miRNA: 3'- gACAuCGGCGCGGGGAGcu----GCGGCau -5'
miRNA: 3'- gacaUCGGcGCGGGGAGCUGCGGCau -5'
miRNA: 3'- -GACAUCGGCGcGGGGAGCUGCGGCAU- -5'
Results 61 - 63 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24348 | 5' | -61.4 | NC_005264.1 | + | 140069 | 0.74 | 0.259278 |
|
Target: 5'- gUGUcGCCGCGCCCCUCauugccCGCCGc- -3' miRNA: 3'- gACAuCGGCGCGGGGAGcu----GCGGCau -5' |
|||||||
| 24348 | 5' | -61.4 | NC_005264.1 | + | 61441 | 0.74 | 0.247574 |
|
Target: 5'- ---cGGCC-CGCUCCUCGGCGCCGa- -3' miRNA: 3'- gacaUCGGcGCGGGGAGCUGCGGCau -5' |
|||||||
| 24348 | 5' | -61.4 | NC_005264.1 | + | 145698 | 0.96 | 0.008662 |
|
Target: 5'- cCUGUAGCCGC-CCCCUCGACGCCGUAc -3' miRNA: 3'- -GACAUCGGCGcGGGGAGCUGCGGCAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home