miRNA display CGI


Results 81 - 100 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24349 3' -64.4 NC_005264.1 + 87620 0.67 0.508584
Target:  5'- aCG-GCCGCCGCgCAgggccgauGCaGCCGCGuGggGc -3'
miRNA:   3'- -GCgCGGCGGCG-GU--------CGaCGGCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 120771 0.67 0.481404
Target:  5'- gCGCaGCUGaCGCCAcGC-GCCGCGGGc- -3'
miRNA:   3'- -GCG-CGGCgGCGGU-CGaCGGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 94540 0.67 0.481404
Target:  5'- aGCGgCGCCGCacugAGaaaUGCCGCuGggGa -3'
miRNA:   3'- gCGCgGCGGCGg---UCg--ACGGCGcCuuC- -5'
24349 3' -64.4 NC_005264.1 + 126029 0.67 0.508584
Target:  5'- cCGCGCC-UCGCCuGC-GCCGCaGAGa -3'
miRNA:   3'- -GCGCGGcGGCGGuCGaCGGCGcCUUc -5'
24349 3' -64.4 NC_005264.1 + 92989 0.67 0.481404
Target:  5'- aCGCGCCGCaGCacgCGGCcGuaGCGGggGc -3'
miRNA:   3'- -GCGCGGCGgCG---GUCGaCggCGCCuuC- -5'
24349 3' -64.4 NC_005264.1 + 1205 0.67 0.463681
Target:  5'- gGCGuCCGCgGCCAug-GCUGCGGGGu -3'
miRNA:   3'- gCGC-GGCGgCGGUcgaCGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 87997 0.67 0.472501
Target:  5'- aGUGCCGCCGCUAcGagaUGUCGCGuauGGg -3'
miRNA:   3'- gCGCGGCGGCGGU-Cg--ACGGCGCcu-UC- -5'
24349 3' -64.4 NC_005264.1 + 43830 0.67 0.472501
Target:  5'- gCGCGCaaccuGCgGUUauaaagaagggGGCUGCCGCGGGGa -3'
miRNA:   3'- -GCGCGg----CGgCGG-----------UCGACGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 39832 0.67 0.476052
Target:  5'- uGUGCCGCCcugcuuggcgguaaaGCCGGCcGgCGCGGccAGGa -3'
miRNA:   3'- gCGCGGCGG---------------CGGUCGaCgGCGCC--UUC- -5'
24349 3' -64.4 NC_005264.1 + 10538 0.67 0.481404
Target:  5'- gGCGCCGCCcUCAGg-GgCGCGGAu- -3'
miRNA:   3'- gCGCGGCGGcGGUCgaCgGCGCCUuc -5'
24349 3' -64.4 NC_005264.1 + 161292 0.68 0.437755
Target:  5'- gGC-CCGCCuauuGCCGGCgcggucaacGCCGCGGGGc -3'
miRNA:   3'- gCGcGGCGG----CGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 156892 0.68 0.437755
Target:  5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3'
miRNA:   3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5'
24349 3' -64.4 NC_005264.1 + 149869 0.68 0.437755
Target:  5'- uCGCGUCGUCGUCGGCggcggcgcGCCGCccGGuAGg -3'
miRNA:   3'- -GCGCGGCGGCGGUCGa-------CGGCG--CCuUC- -5'
24349 3' -64.4 NC_005264.1 + 28045 0.68 0.437755
Target:  5'- gCGCGCgCGaCGCCGGgUaaaaGCgCGCGGAAGc -3'
miRNA:   3'- -GCGCG-GCgGCGGUCgA----CG-GCGCCUUC- -5'
24349 3' -64.4 NC_005264.1 + 159686 0.68 0.437755
Target:  5'- aGgGUCGCCGUuuCGGUUGCCGCcaGGAc- -3'
miRNA:   3'- gCgCGGCGGCG--GUCGACGGCG--CCUuc -5'
24349 3' -64.4 NC_005264.1 + 132232 0.68 0.436905
Target:  5'- cCGuCGCCGCCGCCgucgccgGGCUGCUucuccCGaGAAGc -3'
miRNA:   3'- -GC-GCGGCGGCGG-------UCGACGGc----GC-CUUC- -5'
24349 3' -64.4 NC_005264.1 + 6832 0.68 0.429299
Target:  5'- aGCGUCGCCgggcguaccuuGCUGGUUGCCG-GGAAc -3'
miRNA:   3'- gCGCGGCGG-----------CGGUCGACGGCgCCUUc -5'
24349 3' -64.4 NC_005264.1 + 136360 0.68 0.429299
Target:  5'- gGCGCugggCGCUGCCGGCgcgaauagcGCUGUGGAGc -3'
miRNA:   3'- gCGCG----GCGGCGGUCGa--------CGGCGCCUUc -5'
24349 3' -64.4 NC_005264.1 + 132452 0.68 0.429299
Target:  5'- gCGCGaCCGCCGCCGccgagacgcgacGCgGCgGCGccGAAGg -3'
miRNA:   3'- -GCGC-GGCGGCGGU------------CGaCGgCGC--CUUC- -5'
24349 3' -64.4 NC_005264.1 + 52944 0.68 0.437755
Target:  5'- cCGCGcCCGCgGCgCAuuGC-GCCGCGGGGu -3'
miRNA:   3'- -GCGC-GGCGgCG-GU--CGaCGGCGCCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.