Results 121 - 140 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 156892 | 0.68 | 0.437755 |
Target: 5'- uGCGCCGCUGCC--CUGC-GCGaGggGu -3' miRNA: 3'- gCGCGGCGGCGGucGACGgCGC-CuuC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 52944 | 0.68 | 0.437755 |
Target: 5'- cCGCGcCCGCgGCgCAuuGC-GCCGCGGGGu -3' miRNA: 3'- -GCGC-GGCGgCG-GU--CGaCGGCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 161292 | 0.68 | 0.437755 |
Target: 5'- gGC-CCGCCuauuGCCGGCgcggucaacGCCGCGGGGc -3' miRNA: 3'- gCGcGGCGG----CGGUCGa--------CGGCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 96075 | 0.68 | 0.45408 |
Target: 5'- uCGCGCgGCCuguauccguugcgGCUAcuGUUGCCGCGGuuuAGg -3' miRNA: 3'- -GCGCGgCGG-------------CGGU--CGACGGCGCCu--UC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 37996 | 0.69 | 0.395664 |
Target: 5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3' miRNA: 3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 155333 | 0.69 | 0.396464 |
Target: 5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3' miRNA: 3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 113486 | 0.69 | 0.396464 |
Target: 5'- aCGCGCCgaucuuGCCgcguuccuccggGCCgAGCgcgaacaGCCGCGGGAGg -3' miRNA: 3'- -GCGCGG------CGG------------CGG-UCGa------CGGCGCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 104083 | 0.69 | 0.387722 |
Target: 5'- cCGCGCgugCGCCucugauaGCgCAGCggcgGCCGCGGAu- -3' miRNA: 3'- -GCGCG---GCGG-------CG-GUCGa---CGGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 92697 | 0.69 | 0.372924 |
Target: 5'- gGCGCCGCCGCggCAGCaaGCaCGuuGAGGg -3' miRNA: 3'- gCGCGGCGGCG--GUCGa-CG-GCgcCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 61925 | 0.69 | 0.365291 |
Target: 5'- gGCGCCGCCGCUuGCgcgaagaggaacUGCuagagaCGCGGAGa -3' miRNA: 3'- gCGCGGCGGCGGuCG------------ACG------GCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 18163 | 0.69 | 0.365291 |
Target: 5'- uCGuCGUCGgCGCCA-CUGUCGUGGggGc -3' miRNA: 3'- -GC-GCGGCgGCGGUcGACGGCGCCuuC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 95329 | 0.69 | 0.357767 |
Target: 5'- -uUGCCGCCGCCgGGC-GCCGCGa--- -3' miRNA: 3'- gcGCGGCGGCGG-UCGaCGGCGCcuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 143743 | 0.69 | 0.357767 |
Target: 5'- cCGCGCCGCCGCggugCAGUccuggcucccuaUGC-GCGGGAa -3' miRNA: 3'- -GCGCGGCGGCG----GUCG------------ACGgCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 96349 | 0.69 | 0.357767 |
Target: 5'- gCGCGCCGCgcagccCGCCaAGCauugagucugGCCGCGGcGGu -3' miRNA: 3'- -GCGCGGCG------GCGG-UCGa---------CGGCGCCuUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 34262 | 0.69 | 0.379886 |
Target: 5'- gCGCGCgGuaauCCGCguGCUgcgcuccGCCGCGGAAa -3' miRNA: 3'- -GCGCGgC----GGCGguCGA-------CGGCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 65312 | 0.69 | 0.388512 |
Target: 5'- uGC-CCGCUGCCAcGCcacaGCCGCGGcAGc -3' miRNA: 3'- gCGcGGCGGCGGU-CGa---CGGCGCCuUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 157023 | 0.69 | 0.395664 |
Target: 5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3' miRNA: 3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 36306 | 0.69 | 0.396464 |
Target: 5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3' miRNA: 3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 59113 | 0.7 | 0.350352 |
Target: 5'- gGCgGCCGCCGCC-GCugaUGCCGCGc--- -3' miRNA: 3'- gCG-CGGCGGCGGuCG---ACGGCGCcuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 31248 | 0.7 | 0.353305 |
Target: 5'- gCGCGCCGCuCccuccacaccuaggcGCCAGgUGCCGCGcacaugcaGAAGc -3' miRNA: 3'- -GCGCGGCG-G---------------CGGUCgACGGCGC--------CUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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