Results 81 - 100 of 226 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24349 | 3' | -64.4 | NC_005264.1 | + | 59966 | 0.7 | 0.321796 |
Target: 5'- cCGCGCCGCUcaGCCAcGCggcggugGCCGCGaGcGAGa -3' miRNA: 3'- -GCGCGGCGG--CGGU-CGa------CGGCGC-C-UUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 23736 | 0.7 | 0.314934 |
Target: 5'- -aCGCCGCCGCuCAGCagcaGCCGCGa--- -3' miRNA: 3'- gcGCGGCGGCG-GUCGa---CGGCGCcuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 19536 | 0.7 | 0.335853 |
Target: 5'- aCG-GCCGCCGCCAacGUUGCCGgaGcGAGGu -3' miRNA: 3'- -GCgCGGCGGCGGU--CGACGGCg-C-CUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 70933 | 0.7 | 0.308184 |
Target: 5'- gGuCGCCGCgccCGCCcaucGCUGCCGCGGc-- -3' miRNA: 3'- gC-GCGGCG---GCGGu---CGACGGCGCCuuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 152927 | 0.7 | 0.335139 |
Target: 5'- aGCGCgagauagCGCCGCCuuuCUGCCGCcagggcugGGAAGg -3' miRNA: 3'- gCGCG-------GCGGCGGuc-GACGGCG--------CCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 123616 | 0.7 | 0.308184 |
Target: 5'- aCGCagGCCcuccCCGCCAGC-GCCGCGGcGGc -3' miRNA: 3'- -GCG--CGGc---GGCGGUCGaCGGCGCCuUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 107916 | 0.7 | 0.308184 |
Target: 5'- uCGCaGCCGuUCGCCAGCagcGCCGCgaccuucgcguGGAAGg -3' miRNA: 3'- -GCG-CGGC-GGCGGUCGa--CGGCG-----------CCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 31248 | 0.7 | 0.353305 |
Target: 5'- gCGCGCCGCuCccuccacaccuaggcGCCAGgUGCCGCGcacaugcaGAAGc -3' miRNA: 3'- -GCGCGGCG-G---------------CGGUCgACGGCGC--------CUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 96349 | 0.69 | 0.357767 |
Target: 5'- gCGCGCCGCgcagccCGCCaAGCauugagucugGCCGCGGcGGu -3' miRNA: 3'- -GCGCGGCG------GCGG-UCGa---------CGGCGCCuUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 143743 | 0.69 | 0.357767 |
Target: 5'- cCGCGCCGCCGCggugCAGUccuggcucccuaUGC-GCGGGAa -3' miRNA: 3'- -GCGCGGCGGCG----GUCG------------ACGgCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 37996 | 0.69 | 0.395664 |
Target: 5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3' miRNA: 3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 113486 | 0.69 | 0.396464 |
Target: 5'- aCGCGCCgaucuuGCCgcguuccuccggGCCgAGCgcgaacaGCCGCGGGAGg -3' miRNA: 3'- -GCGCGG------CGG------------CGG-UCGa------CGGCGCCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 104083 | 0.69 | 0.387722 |
Target: 5'- cCGCGCgugCGCCucugauaGCgCAGCggcgGCCGCGGAu- -3' miRNA: 3'- -GCGCG---GCGG-------CG-GUCGa---CGGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 36306 | 0.69 | 0.396464 |
Target: 5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3' miRNA: 3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 155333 | 0.69 | 0.396464 |
Target: 5'- gGaCGUCGUCGCUAucGCUGCCGUaGAGGa -3' miRNA: 3'- gC-GCGGCGGCGGU--CGACGGCGcCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 157023 | 0.69 | 0.395664 |
Target: 5'- gGCGgccaCCGCCGCCGGaCUauugaacGCCGUGGGc- -3' miRNA: 3'- gCGC----GGCGGCGGUC-GA-------CGGCGCCUuc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 65312 | 0.69 | 0.388512 |
Target: 5'- uGC-CCGCUGCCAcGCcacaGCCGCGGcAGc -3' miRNA: 3'- gCGcGGCGGCGGU-CGa---CGGCGCCuUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 92697 | 0.69 | 0.372924 |
Target: 5'- gGCGCCGCCGCggCAGCaaGCaCGuuGAGGg -3' miRNA: 3'- gCGCGGCGGCG--GUCGa-CG-GCgcCUUC- -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 61925 | 0.69 | 0.365291 |
Target: 5'- gGCGCCGCCGCUuGCgcgaagaggaacUGCuagagaCGCGGAGa -3' miRNA: 3'- gCGCGGCGGCGGuCG------------ACG------GCGCCUUc -5' |
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24349 | 3' | -64.4 | NC_005264.1 | + | 18163 | 0.69 | 0.365291 |
Target: 5'- uCGuCGUCGgCGCCA-CUGUCGUGGggGc -3' miRNA: 3'- -GC-GCGGCgGCGGUcGACGGCGCCuuC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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